Wall clock time and date at job start Mon Mar 30 2020 02:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30605 * 1 3 3 Si 1.86800 * 119.99591 * 2 1 4 4 H 1.48508 * 109.46757 * 180.27392 * 3 2 1 5 5 H 1.48492 * 109.47323 * 300.27364 * 3 2 1 6 6 H 1.48501 * 109.47344 * 60.27689 * 3 2 1 7 7 C 1.40215 * 120.00013 * 180.27376 * 2 1 3 8 8 H 1.07999 * 119.99898 * 179.72797 * 7 2 1 9 9 C 1.41256 * 119.99793 * 359.72689 * 7 2 1 10 10 N 1.33663 * 124.24786 * 359.69834 * 9 7 2 11 11 C 1.42886 * 105.24328 * 176.85567 * 10 9 7 12 12 H 1.08997 * 108.14352 * 279.20415 * 11 10 9 13 13 C 1.49657 * 129.36704 * 144.51463 * 11 10 9 14 14 C 1.55944 * 104.15452 * 212.44549 * 13 11 10 15 15 C 1.56286 * 105.64259 * 6.97530 * 14 13 11 16 16 C 1.51340 * 101.97262 * 25.49812 * 15 14 13 17 17 H 1.09004 * 111.48817 * 71.15953 * 16 15 14 18 18 O 1.38435 * 124.24085 * 180.02562 * 9 7 2 19 19 H 0.97000 * 120.00342 * 359.72809 * 1 2 3 20 20 H 1.09001 * 110.49829 * 331.11731 * 13 11 10 21 21 H 1.08998 * 110.49187 * 93.64611 * 13 11 10 22 22 H 1.09009 * 110.20941 * 126.01900 * 14 13 11 23 23 H 1.08994 * 110.21487 * 247.84582 * 14 13 11 24 24 H 1.08995 * 110.93094 * 267.32701 * 15 14 13 25 25 H 1.09003 * 110.92902 * 143.66608 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2399 1.6178 0.0000 4 1 3.7000 1.3465 -0.0067 5 1 1.8762 2.3994 -1.2091 6 1 1.8862 2.3936 1.2159 7 6 2.0071 -1.2143 -0.0058 8 1 3.0871 -1.2142 -0.0102 9 6 1.3008 -2.4376 -0.0058 10 7 -0.0321 -2.5366 0.0053 11 6 -0.3055 -3.9367 -0.0750 12 1 -0.2209 -4.2398 -1.1186 13 6 -1.4032 -4.7278 0.5645 14 6 -0.7602 -6.1224 0.8354 15 6 0.7536 -5.9647 0.4804 16 6 0.9708 -4.4809 0.6839 17 1 0.9456 -4.2149 1.7407 18 8 1.9024 -3.6844 -0.0108 19 1 -0.4851 0.8400 0.0040 20 1 -1.7138 -4.2625 1.5001 21 1 -2.2511 -4.8215 -0.1139 22 1 -0.8748 -6.3924 1.8853 23 1 -1.2205 -6.8791 0.2002 24 1 0.9422 -6.2474 -0.5552 25 1 1.3757 -6.5462 1.1608 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105725831.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:57 Heat of formation + Delta-G solvation = -21.740418 kcal Electronic energy + Delta-G solvation = -10907.503740 eV Core-core repulsion = 8886.227612 eV Total energy + Delta-G solvation = -2021.276128 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.07984 -37.20689 -35.56225 -33.09420 -29.74510 -29.02587 -26.49156 -22.33944 -22.05639 -20.61201 -18.76932 -18.23821 -16.98588 -16.27008 -15.67784 -15.06649 -14.83581 -14.33231 -13.48524 -13.13078 -12.95493 -12.87922 -12.28854 -12.21039 -12.08934 -11.79679 -11.53683 -11.35015 -11.04913 -9.74271 -9.36375 -8.49559 -6.83646 1.33091 1.42604 1.61501 1.88392 2.22151 2.62795 3.22649 3.63383 3.80166 4.02128 4.28169 4.30368 4.48773 4.57937 4.73033 4.85344 4.99888 5.03905 5.11220 5.17958 5.38968 5.54250 5.79575 6.12627 6.60943 6.86512 7.85841 8.43083 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.094233 B = 0.012038 C = 0.010953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.064353 B = 2325.428021 C = 2555.843959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.026 3.974 3 Si 1.011 2.989 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.467 4.467 8 H 0.094 0.906 9 C 0.332 3.668 10 N -0.631 5.631 11 C 0.015 3.985 12 H 0.005 0.995 13 C -0.097 4.097 14 C -0.099 4.099 15 C -0.091 4.091 16 C 0.006 3.994 17 H 0.052 0.948 18 O -0.382 6.382 19 H 0.285 0.715 20 H 0.056 0.944 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 -5.217 2.091 5.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.195 4.195 3 Si 0.829 3.171 4 H -0.174 1.174 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.505 4.505 8 H 0.112 0.888 9 C 0.137 3.863 10 N -0.376 5.376 11 C -0.099 4.099 12 H 0.023 0.977 13 C -0.135 4.135 14 C -0.137 4.137 15 C -0.128 4.128 16 C -0.054 4.054 17 H 0.069 0.931 18 O -0.293 6.293 19 H 0.095 0.905 20 H 0.074 0.926 21 H 0.090 0.910 22 H 0.109 0.891 23 H 0.117 0.883 24 H 0.090 0.910 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.526 -4.829 2.019 5.261 hybrid contribution 0.698 0.083 -0.193 0.729 sum 0.172 -4.746 1.826 5.088 Atomic orbital electron populations 1.70141 1.09228 1.29851 1.29802 1.27022 0.95850 1.04433 0.92231 0.84760 0.79008 0.74270 0.79096 1.17426 1.18704 1.18538 1.19245 0.94914 0.87580 1.48759 0.88812 1.24099 0.88267 0.84139 0.89841 1.75860 1.08498 1.11081 1.42187 1.23034 0.97036 0.93844 0.95959 0.97727 1.21312 0.96675 0.95468 1.00064 1.22911 0.91894 0.95529 1.03389 1.21941 0.98287 0.89694 1.02906 1.24216 0.89549 0.96719 0.94882 0.93055 1.87097 1.46846 1.21754 1.73565 0.90489 0.92552 0.91008 0.89066 0.88290 0.90950 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.85 11.79 21.87 0.26 -43.59 15 2 C 0.03 1.39 5.50 85.36 0.47 1.86 15 3 Si 1.01 39.10 29.56 68.60 2.03 41.13 15 4 H -0.25 -9.24 7.11 99.48 0.71 -8.54 15 5 H -0.26 -9.65 7.11 99.48 0.71 -8.95 15 6 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 7 C -0.47 -27.28 9.51 23.49 0.22 -27.05 15 8 H 0.09 5.11 7.85 -2.91 -0.02 5.09 15 9 C 0.33 20.37 7.26 85.16 0.62 20.99 15 10 N -0.63 -38.84 9.90 -436.01 -4.32 -43.16 15 11 C 0.01 0.76 3.71 46.42 0.17 0.93 15 12 H 0.00 0.27 8.07 -2.39 -0.02 0.25 15 13 C -0.10 -3.73 6.71 30.54 0.20 -3.53 15 14 C -0.10 -2.80 6.96 32.76 0.23 -2.57 15 15 C -0.09 -3.02 6.67 31.19 0.21 -2.82 15 16 C 0.01 0.26 4.05 31.88 0.13 0.39 15 17 H 0.05 2.51 8.14 -2.38 -0.02 2.49 15 18 O -0.38 -21.64 11.32 -121.06 -1.37 -23.01 15 19 H 0.28 14.48 8.29 -92.71 -0.77 13.71 15 20 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 21 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 22 H 0.09 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 25 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15 Total: -1.00 -71.25 215.45 0.03 -71.22 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.17 Total: 9.21 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 2.25 Total: -11.80 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -4.06 Total: -86.75 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -1.37 Total: -23.01 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -71.25 0.03 -71.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105725831.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.481 kcal (2) G-P(sol) polarization free energy of solvation -71.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds