Wall clock time and date at job start Mon Mar 30 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30601 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48505 * 109.47059 * 274.98333 * 3 2 1 5 5 H 1.48505 * 109.47368 * 34.98406 * 3 2 1 6 6 H 1.48501 * 109.47287 * 154.98412 * 3 2 1 7 7 C 1.40211 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00472 * 186.09665 * 7 2 1 9 9 C 1.41260 * 119.99866 * 6.10230 * 7 2 1 10 10 N 1.30715 * 123.25751 * 174.04368 * 9 7 2 11 11 C 1.47301 * 108.26750 * 179.56173 * 10 9 7 12 12 H 1.08999 * 112.74816 * 105.87479 * 11 10 9 13 13 C 1.53544 * 110.05101 * 232.59223 * 11 10 9 14 14 C 1.53554 * 106.27980 * 81.14500 * 13 11 10 15 15 C 1.53417 * 107.23912 * 17.83674 * 14 13 11 16 16 C 1.53689 * 107.56880 * 359.45862 * 15 14 13 17 17 H 1.08995 * 113.26630 * 108.24613 * 16 15 14 18 18 O 1.35224 * 123.25635 * 354.03323 * 9 7 2 19 19 H 0.96999 * 119.99756 * 359.97438 * 1 2 3 20 20 H 1.08999 * 110.09497 * 321.94746 * 13 11 10 21 21 H 1.09003 * 110.09324 * 200.34612 * 13 11 10 22 22 H 1.08998 * 109.88767 * 258.42240 * 14 13 11 23 23 H 1.09006 * 109.88756 * 137.23651 * 14 13 11 24 24 H 1.09002 * 109.83579 * 118.97101 * 15 14 13 25 25 H 1.09003 * 109.82663 * 239.95678 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3060 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.3822 2.1072 -1.3948 5 1 1.4941 2.6200 0.8027 6 1 3.5863 1.4120 0.5920 7 6 2.0071 -1.2143 -0.0005 8 1 3.0825 -1.2170 0.0988 9 6 1.3067 -2.4341 -0.1311 10 7 1.9006 -3.5922 -0.2527 11 6 0.8643 -4.6341 -0.3543 12 1 0.7585 -5.0260 -1.3659 13 6 1.1223 -5.7361 0.6833 14 6 0.5606 -5.2145 2.0139 15 6 -0.3969 -4.0625 1.6828 16 6 -0.3986 -3.8848 0.1562 17 1 -1.3233 -4.2177 -0.3150 18 8 -0.0429 -2.5167 -0.1423 19 1 -0.4850 0.8401 0.0004 20 1 2.1926 -5.9206 0.7755 21 1 0.6074 -6.6519 0.3928 22 1 1.3735 -4.8520 2.6429 23 1 0.0197 -6.0107 2.5255 24 1 -1.4018 -4.3059 2.0279 25 1 -0.0520 -3.1459 2.1614 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105725832.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:59 Heat of formation + Delta-G solvation = -52.949180 kcal Electronic energy + Delta-G solvation = -11062.201922 eV Core-core repulsion = 9039.572480 eV Total energy + Delta-G solvation = -2022.629441 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.71866 -36.74864 -35.16696 -33.24126 -29.95053 -28.89174 -27.14253 -22.09509 -21.64232 -20.81810 -19.07134 -17.48223 -16.92122 -16.07817 -15.56671 -15.41542 -14.77243 -14.07284 -13.36935 -13.13513 -12.82631 -12.72058 -12.51602 -12.23248 -11.89577 -11.83484 -11.65861 -11.28500 -11.02538 -10.12990 -9.52356 -8.67071 -6.80414 1.32344 1.41273 1.57992 2.00939 2.22806 2.99730 3.33093 3.74342 3.85886 3.99173 4.27009 4.49454 4.58968 4.66548 4.75161 4.90578 5.07910 5.10467 5.18499 5.23953 5.38218 5.50080 5.88768 6.25274 6.64435 6.85027 7.96465 8.35962 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.077122 B = 0.013334 C = 0.012722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.976069 B = 2099.447038 C = 2200.355013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.037 3.963 3 Si 1.003 2.997 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.392 3.608 10 N -0.718 5.718 11 C 0.028 3.972 12 H 0.062 0.938 13 C -0.098 4.098 14 C -0.107 4.107 15 C -0.128 4.128 16 C 0.022 3.978 17 H 0.128 0.872 18 O -0.339 6.339 19 H 0.291 0.709 20 H 0.056 0.944 21 H 0.088 0.912 22 H 0.043 0.957 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 -3.063 2.584 4.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.183 4.183 3 Si 0.822 3.178 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.530 4.530 8 H 0.112 0.888 9 C 0.194 3.806 10 N -0.470 5.470 11 C -0.083 4.083 12 H 0.080 0.920 13 C -0.136 4.136 14 C -0.145 4.145 15 C -0.166 4.166 16 C -0.036 4.036 17 H 0.146 0.854 18 O -0.244 6.244 19 H 0.101 0.899 20 H 0.075 0.925 21 H 0.106 0.894 22 H 0.062 0.938 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.785 -3.251 2.511 4.479 hybrid contribution -0.510 0.665 -0.125 0.848 sum -2.295 -2.586 2.387 4.201 Atomic orbital electron populations 1.69821 1.09079 1.30888 1.33635 1.27050 0.95793 1.05061 0.90368 0.84896 0.78824 0.74498 0.79618 1.18390 1.18493 1.17978 1.19159 0.95102 0.88123 1.50579 0.88809 1.22159 0.79109 0.94587 0.84746 1.75445 1.26905 0.98263 1.46375 1.23691 0.90398 0.96527 0.97733 0.91999 1.21860 1.00847 0.97065 0.93822 1.21812 0.97840 0.97298 0.97505 1.22313 1.01060 0.98672 0.94511 1.24933 1.00064 0.82020 0.96581 0.85396 1.87309 1.23324 1.28672 1.85125 0.89861 0.92550 0.89373 0.93770 0.88558 0.89145 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.96 11.84 21.86 0.26 -43.71 15 2 C 0.04 1.93 5.49 85.36 0.47 2.40 15 3 Si 1.00 39.00 29.56 68.60 2.03 41.03 15 4 H -0.26 -9.66 7.11 99.48 0.71 -8.96 15 5 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 7 C -0.49 -28.63 9.46 23.49 0.22 -28.40 15 8 H 0.09 5.36 7.86 -2.91 -0.02 5.33 15 9 C 0.39 23.29 6.91 85.60 0.59 23.88 15 10 N -0.72 -40.60 11.42 -434.41 -4.96 -45.56 15 11 C 0.03 1.30 4.67 45.87 0.21 1.51 15 12 H 0.06 2.78 8.14 -2.39 -0.02 2.76 15 13 C -0.10 -3.61 6.40 30.96 0.20 -3.41 15 14 C -0.11 -3.73 6.77 30.92 0.21 -3.52 15 15 C -0.13 -5.11 6.24 30.97 0.19 -4.91 15 16 C 0.02 1.01 4.98 31.68 0.16 1.17 15 17 H 0.13 4.91 8.14 -2.39 -0.02 4.89 15 18 O -0.34 -19.31 8.77 -85.06 -0.75 -20.05 15 19 H 0.29 14.06 8.29 -92.71 -0.77 13.29 15 20 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.09 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.10 2.55 8.14 -2.38 -0.02 2.53 15 24 H 0.09 2.95 8.14 -2.39 -0.02 2.93 15 25 H 0.03 1.68 7.74 -2.39 -0.02 1.67 15 Total: -1.00 -66.51 214.71 0.01 -66.50 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.17 Total: 13.08 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 2.26 Total: -11.29 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -4.70 Total: -89.26 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.75 Total: -20.05 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -66.51 0.01 -66.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105725832.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.553 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds