Wall clock time and date at job start Mon Mar 30 2020 01:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34743 * 124.79531 * 2 1 4 4 C 1.40073 * 124.79752 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99714 * 6.95792 * 4 3 2 6 6 C 1.40311 * 119.99931 * 187.22946 * 4 3 2 7 7 N 1.30687 * 119.99759 * 15.61152 * 6 4 3 8 8 Si 1.86794 * 119.99920 * 195.61333 * 6 4 3 9 9 H 1.48500 * 109.47050 * 89.99961 * 8 6 4 10 10 H 1.48501 * 109.47308 * 209.99684 * 8 6 4 11 11 H 1.48502 * 109.47142 * 330.00321 * 8 6 4 12 12 C 1.51127 * 110.40378 * 180.26287 * 3 2 1 13 13 C 1.54674 * 104.87741 * 342.89749 * 12 3 2 14 14 C 1.53006 * 111.12601 * 267.51207 * 13 12 3 15 15 C 1.53004 * 110.82787 * 143.82736 * 13 12 3 16 16 C 1.51129 * 124.79680 * 180.02562 * 2 1 3 17 17 H 1.08996 * 109.47548 * 5.04682 * 1 2 3 18 18 H 1.09005 * 109.47234 * 125.05196 * 1 2 3 19 19 H 1.09005 * 109.47069 * 245.04590 * 1 2 3 20 20 H 0.97004 * 119.99828 * 174.99505 * 7 6 4 21 21 H 1.09002 * 110.34248 * 101.88168 * 12 3 2 22 22 H 1.08996 * 110.34453 * 224.13731 * 12 3 2 23 23 H 1.09003 * 109.46967 * 172.62332 * 14 13 12 24 24 H 1.08993 * 109.47314 * 292.62360 * 14 13 12 25 25 H 1.09002 * 109.46694 * 52.62363 * 14 13 12 26 26 H 1.09007 * 109.46628 * 307.54507 * 15 13 12 27 27 H 1.08997 * 109.47193 * 67.54303 * 15 13 12 28 28 H 1.08997 * 109.47000 * 187.54808 * 15 13 12 29 29 H 1.09003 * 110.34263 * 315.59431 * 16 2 1 30 30 H 1.08995 * 110.34391 * 77.85749 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.1065 0.0000 4 6 1.7875 2.4193 -0.0005 5 1 0.7291 2.6017 0.1123 6 6 2.6727 3.4971 -0.1534 7 7 3.8851 3.2893 -0.5948 8 14 2.1184 5.2289 0.2742 9 1 2.4190 5.5066 1.7016 10 1 2.8388 6.2050 -0.5823 11 1 0.6566 5.3519 0.0432 12 6 3.7397 0.7309 -0.0065 13 6 3.7709 -0.7529 0.4291 14 6 3.9531 -0.8795 1.9430 15 6 4.8679 -1.5158 -0.3163 16 6 2.3694 -1.2410 -0.0006 17 1 -0.3634 1.0236 -0.0904 18 1 -0.3634 -0.5902 -0.8413 19 1 -0.3633 -0.4336 0.9318 20 1 4.4731 4.0408 -0.7695 21 1 4.1553 0.8432 -1.0079 22 1 4.2917 1.3453 0.7047 23 1 3.8406 -1.9232 2.2365 24 1 4.9475 -0.5295 2.2198 25 1 3.2010 -0.2760 2.4512 26 1 4.7558 -1.3575 -1.3889 27 1 5.8446 -1.1533 0.0043 28 1 4.7847 -2.5799 -0.0954 29 1 1.9861 -1.9692 0.7143 30 1 2.4091 -1.6744 -0.9999 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116434211.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:57 Heat of formation + Delta-G solvation = -21.973726 kcal Electronic energy + Delta-G solvation = -11074.006464 eV Core-core repulsion = 9253.979224 eV Total energy + Delta-G solvation = -1820.027239 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.98454 -33.71646 -31.72347 -28.19000 -26.58239 -26.54906 -24.81626 -21.92377 -18.01048 -17.64450 -15.54459 -14.66962 -13.82900 -13.55768 -12.77483 -12.61485 -12.27998 -11.93571 -11.80048 -11.55855 -11.24918 -10.85551 -10.78369 -10.65089 -10.47098 -9.96365 -9.68193 -9.38762 -9.25906 -8.98758 -8.93555 -7.13112 -6.63645 -4.09475 2.98821 3.12378 3.16680 3.92594 4.02164 5.34715 5.69068 5.84081 5.85976 6.28518 6.40413 6.46570 6.57463 6.63414 6.69824 6.82934 6.87757 6.99704 7.09146 7.14364 7.24672 7.30467 7.38680 7.46421 7.64550 7.71134 8.12324 8.50443 8.67417 9.26564 9.35841 10.32164 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.045502 B = 0.014967 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.210068 B = 1870.377057 C = 2235.094433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.415 4.415 3 C 0.085 3.915 4 C -0.454 4.454 5 H 0.076 0.924 6 C 0.076 3.924 7 N -0.808 5.808 8 Si 0.906 3.094 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.263 1.263 12 C -0.044 4.044 13 C -0.088 4.088 14 C -0.122 4.122 15 C -0.128 4.128 16 C -0.026 4.026 17 H 0.043 0.957 18 H 0.017 0.983 19 H 0.016 0.984 20 H 0.278 0.722 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.039 0.961 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -2.436 1.574 3.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.418 4.418 3 C 0.083 3.917 4 C -0.484 4.484 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.435 5.435 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.188 1.188 12 C -0.081 4.081 13 C -0.088 4.088 14 C -0.180 4.180 15 C -0.186 4.186 16 C -0.063 4.063 17 H 0.062 0.938 18 H 0.036 0.964 19 H 0.034 0.966 20 H 0.088 0.912 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.572 -2.317 1.564 3.207 hybrid contribution -0.149 0.867 0.117 0.887 sum 1.423 -1.451 1.681 2.637 Atomic orbital electron populations 1.19666 0.94346 0.99073 0.96696 1.21037 0.92667 0.93059 1.35071 1.18755 0.92169 0.92111 0.88648 1.19180 0.94618 0.90378 1.44241 0.90629 1.26033 0.94152 1.01490 0.92436 1.69732 1.07126 1.33552 1.33060 0.86351 0.79914 0.81355 0.79226 1.19503 1.20519 1.18754 1.21032 0.96414 0.90397 1.00297 1.21526 0.94978 0.98056 0.94210 1.21640 1.00489 0.99889 0.95950 1.21746 0.98140 0.98725 0.99958 1.20510 0.92682 0.96333 0.96802 0.93769 0.96372 0.96559 0.91153 0.91808 0.92573 0.94186 0.93964 0.92507 0.93134 0.93646 0.94009 0.95627 0.95375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.96 10.29 36.00 0.37 -0.59 16 2 C -0.41 -10.60 6.30 -100.38 -0.63 -11.23 16 3 C 0.09 2.31 5.82 -104.96 -0.61 1.70 16 4 C -0.45 -12.48 8.87 -38.11 -0.34 -12.82 16 5 H 0.08 2.06 6.51 -52.49 -0.34 1.72 16 6 C 0.08 1.95 5.41 -17.26 -0.09 1.86 16 7 N -0.81 -21.06 10.85 55.57 0.60 -20.46 16 8 Si 0.91 19.38 29.59 -169.99 -5.03 14.34 16 9 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 12 C -0.04 -1.10 3.95 -26.79 -0.11 -1.21 16 13 C -0.09 -1.88 0.98 -152.83 -0.15 -2.02 16 14 C -0.12 -2.38 8.49 37.16 0.32 -2.07 16 15 C -0.13 -2.35 8.50 37.16 0.32 -2.04 16 16 C -0.03 -0.60 5.85 -26.88 -0.16 -0.75 16 17 H 0.04 1.03 6.41 -51.93 -0.33 0.70 16 18 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 19 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 20 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 21 H 0.06 1.67 7.55 -51.93 -0.39 1.28 16 22 H 0.06 1.46 7.24 -51.93 -0.38 1.08 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.55 7.91 -51.93 -0.41 0.14 16 30 H 0.03 0.63 7.89 -51.93 -0.41 0.22 16 LS Contribution 243.09 15.07 3.66 3.66 Total: -1.00 -27.13 243.09 -6.63 -33.76 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.78 Total: -2.12 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: -1.09 Total: -29.18 kcal Atomic # 7 Polarization: -21.06 SS G_CDS: 0.60 Total: -20.46 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.13 -6.63 -33.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116434211.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.782 kcal (2) G-P(sol) polarization free energy of solvation -27.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds