Wall clock time and date at job start Mon Mar 30 2020 01:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34743 * 124.79531 * 2 1 4 4 C 1.40073 * 124.79752 * 359.97438 * 3 2 1 5 5 H 1.07990 * 119.99714 * 6.95792 * 4 3 2 6 6 C 1.40311 * 119.99931 * 187.22946 * 4 3 2 7 7 N 1.30687 * 119.99759 * 15.61152 * 6 4 3 8 8 Si 1.86794 * 119.99920 * 195.61333 * 6 4 3 9 9 H 1.48500 * 109.47050 * 89.99961 * 8 6 4 10 10 H 1.48501 * 109.47308 * 209.99684 * 8 6 4 11 11 H 1.48502 * 109.47142 * 330.00321 * 8 6 4 12 12 C 1.51127 * 110.40378 * 180.26287 * 3 2 1 13 13 C 1.54674 * 104.87741 * 342.89749 * 12 3 2 14 14 C 1.53006 * 111.12601 * 267.51207 * 13 12 3 15 15 C 1.53004 * 110.82787 * 143.82736 * 13 12 3 16 16 C 1.51129 * 124.79680 * 180.02562 * 2 1 3 17 17 H 1.08996 * 109.47548 * 5.04682 * 1 2 3 18 18 H 1.09005 * 109.47234 * 125.05196 * 1 2 3 19 19 H 1.09005 * 109.47069 * 245.04590 * 1 2 3 20 20 H 0.97004 * 119.99828 * 174.99505 * 7 6 4 21 21 H 1.09002 * 110.34248 * 101.88168 * 12 3 2 22 22 H 1.08996 * 110.34453 * 224.13731 * 12 3 2 23 23 H 1.09003 * 109.46967 * 172.62332 * 14 13 12 24 24 H 1.08993 * 109.47314 * 292.62360 * 14 13 12 25 25 H 1.09002 * 109.46694 * 52.62363 * 14 13 12 26 26 H 1.09007 * 109.46628 * 307.54507 * 15 13 12 27 27 H 1.08997 * 109.47193 * 67.54303 * 15 13 12 28 28 H 1.08997 * 109.47000 * 187.54808 * 15 13 12 29 29 H 1.09003 * 110.34263 * 315.59431 * 16 2 1 30 30 H 1.08995 * 110.34391 * 77.85749 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.1065 0.0000 4 6 1.7875 2.4193 -0.0005 5 1 0.7291 2.6017 0.1123 6 6 2.6727 3.4971 -0.1534 7 7 3.8851 3.2893 -0.5948 8 14 2.1184 5.2289 0.2742 9 1 2.4190 5.5066 1.7016 10 1 2.8388 6.2050 -0.5823 11 1 0.6566 5.3519 0.0432 12 6 3.7397 0.7309 -0.0065 13 6 3.7709 -0.7529 0.4291 14 6 3.9531 -0.8795 1.9430 15 6 4.8679 -1.5158 -0.3163 16 6 2.3694 -1.2410 -0.0006 17 1 -0.3634 1.0236 -0.0904 18 1 -0.3634 -0.5902 -0.8413 19 1 -0.3633 -0.4336 0.9318 20 1 4.4731 4.0408 -0.7695 21 1 4.1553 0.8432 -1.0079 22 1 4.2917 1.3453 0.7047 23 1 3.8406 -1.9232 2.2365 24 1 4.9475 -0.5295 2.2198 25 1 3.2010 -0.2760 2.4512 26 1 4.7558 -1.3575 -1.3889 27 1 5.8446 -1.1533 0.0043 28 1 4.7847 -2.5799 -0.0954 29 1 1.9861 -1.9692 0.7143 30 1 2.4091 -1.6744 -0.9999 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116434211.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:57 Heat of formation + Delta-G solvation = -35.487838 kcal Electronic energy + Delta-G solvation = -11074.592480 eV Core-core repulsion = 9253.979224 eV Total energy + Delta-G solvation = -1820.613255 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.81478 -35.62107 -33.57631 -30.13334 -28.39194 -28.06554 -26.74075 -23.82457 -19.88636 -19.46668 -17.53270 -16.48199 -15.59429 -15.32469 -14.44802 -14.38976 -14.11617 -13.64051 -13.54130 -13.29804 -12.95882 -12.66171 -12.48255 -12.35454 -12.21367 -11.64461 -11.50375 -11.24043 -11.10814 -10.90233 -10.82053 -9.15358 -8.57161 -6.13621 1.25690 1.37258 1.49384 1.99827 2.22810 3.31814 4.00926 4.20636 4.23187 4.71977 4.79095 4.85240 4.92759 4.96364 5.06782 5.08105 5.17380 5.23282 5.27531 5.32450 5.35140 5.42253 5.53636 5.58816 5.73704 5.82831 6.17446 6.49659 6.65972 7.24986 7.34371 8.39466 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.045502 B = 0.014967 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.210068 B = 1870.377057 C = 2235.094433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.427 4.427 3 C 0.046 3.954 4 C -0.493 4.493 5 H 0.066 0.934 6 C 0.036 3.964 7 N -0.832 5.832 8 Si 0.977 3.023 9 H -0.264 1.264 10 H -0.266 1.266 11 H -0.263 1.263 12 C -0.033 4.033 13 C -0.086 4.086 14 C -0.118 4.118 15 C -0.123 4.123 16 C -0.027 4.027 17 H 0.031 0.969 18 H 0.032 0.968 19 H 0.031 0.969 20 H 0.286 0.714 21 H 0.041 0.959 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -2.907 2.066 3.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.430 4.430 3 C 0.044 3.956 4 C -0.523 4.523 5 H 0.084 0.916 6 C -0.179 4.179 7 N -0.458 5.458 8 Si 0.799 3.201 9 H -0.189 1.189 10 H -0.190 1.190 11 H -0.187 1.187 12 C -0.070 4.070 13 C -0.086 4.086 14 C -0.175 4.175 15 C -0.180 4.180 16 C -0.064 4.064 17 H 0.050 0.950 18 H 0.051 0.949 19 H 0.050 0.950 20 H 0.097 0.903 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.861 -2.807 2.051 3.943 hybrid contribution -0.268 0.960 -0.060 0.998 sum 1.593 -1.847 1.990 3.149 Atomic orbital electron populations 1.19684 0.93274 0.98780 0.98074 1.21653 0.94041 0.94053 1.33274 1.19200 0.93638 0.92751 0.89961 1.19389 0.94651 0.91762 1.46476 0.91633 1.26811 0.94087 1.05298 0.91705 1.69784 1.07936 1.35135 1.32989 0.85284 0.79389 0.76265 0.79201 1.18886 1.19037 1.18745 1.20870 0.94865 0.92836 0.98467 1.21576 0.95483 0.95621 0.95946 1.21592 1.00496 1.01271 0.94143 1.21687 0.97385 0.99879 0.99065 1.20542 0.93015 0.95408 0.97390 0.94996 0.94881 0.94991 0.90326 0.94043 0.94585 0.91420 0.92698 0.94786 0.93832 0.92491 0.91334 0.94129 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.91 10.29 71.24 0.73 -1.18 16 2 C -0.43 -21.78 6.30 -17.12 -0.11 -21.89 16 3 C 0.05 2.56 5.82 -20.09 -0.12 2.44 16 4 C -0.49 -27.81 8.87 23.22 0.21 -27.60 16 5 H 0.07 3.69 6.51 -2.92 -0.02 3.67 16 6 C 0.04 1.85 5.41 85.37 0.46 2.31 16 7 N -0.83 -43.97 10.85 21.89 0.24 -43.74 16 8 Si 0.98 39.85 29.59 68.60 2.03 41.88 16 9 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 12 C -0.03 -1.67 3.95 30.55 0.12 -1.55 16 13 C -0.09 -3.57 0.98 -51.10 -0.05 -3.62 16 14 C -0.12 -4.35 8.49 71.98 0.61 -3.74 16 15 C -0.12 -4.20 8.50 71.98 0.61 -3.59 16 16 C -0.03 -1.17 5.85 30.49 0.18 -0.99 16 17 H 0.03 1.50 6.41 -2.39 -0.02 1.49 16 18 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 19 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 20 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 21 H 0.04 2.22 7.55 -2.39 -0.02 2.21 16 22 H 0.04 1.91 7.24 -2.39 -0.02 1.89 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.53 8.05 -2.38 -0.02 1.51 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.65 7.91 -2.39 -0.02 1.63 16 30 H 0.03 1.33 7.89 -2.39 -0.02 1.31 16 Total: -1.00 -58.03 243.09 6.00 -52.02 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.09 Total: 9.25 kcal Atomic # 6 Polarization: -62.06 SS G_CDS: 2.65 Total: -59.41 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.24 Total: -43.74 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -58.03 6.00 -52.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116434211.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.535 kcal (2) G-P(sol) polarization free energy of solvation -58.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds