Wall clock time and date at job start Mon Mar 30 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.38683 * 2 1 4 4 C 1.54520 * 110.33755 * 122.23310 * 2 1 3 5 5 C 1.54515 * 101.98415 * 93.44099 * 4 2 1 6 6 C 1.53003 * 110.34421 * 144.29573 * 5 4 2 7 7 C 1.53000 * 110.34461 * 266.56079 * 5 4 2 8 8 C 1.51133 * 105.01198 * 25.22555 * 5 4 2 9 9 C 1.34748 * 110.40328 * 343.61011 * 8 5 4 10 10 C 1.40074 * 124.79425 * 179.87497 * 9 8 5 11 11 H 1.07996 * 119.99972 * 161.43850 * 10 9 8 12 12 C 1.40312 * 119.99861 * 341.44517 * 10 9 8 13 13 N 1.30687 * 119.99980 * 345.93094 * 12 10 9 14 14 Si 1.86808 * 119.99581 * 165.93190 * 12 10 9 15 15 H 1.48489 * 109.47057 * 265.12227 * 14 12 10 16 16 H 1.48501 * 109.46546 * 145.12208 * 14 12 10 17 17 H 1.48500 * 109.47084 * 25.12503 * 14 12 10 18 18 H 1.09001 * 109.47067 * 180.77474 * 1 2 3 19 19 H 1.08998 * 109.47887 * 300.78616 * 1 2 3 20 20 H 1.09010 * 109.46963 * 60.78457 * 1 2 3 21 21 H 1.09004 * 110.92226 * 211.60900 * 4 2 1 22 22 H 1.09003 * 110.93005 * 335.26712 * 4 2 1 23 23 H 1.09003 * 109.47156 * 60.00104 * 6 5 4 24 24 H 1.08998 * 109.46936 * 180.02562 * 6 5 4 25 25 H 1.08997 * 109.47055 * 299.99685 * 6 5 4 26 26 H 1.08995 * 109.47357 * 59.99668 * 7 5 4 27 27 H 1.09002 * 109.46753 * 180.02562 * 7 5 4 28 28 H 1.08999 * 109.46605 * 299.99675 * 7 5 4 29 29 H 1.08002 * 124.79902 * 163.48329 * 8 5 4 30 30 H 0.96997 * 119.99346 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0670 -0.7728 1.2256 5 6 2.2636 -2.1927 0.6487 6 6 3.4974 -2.8524 1.2681 7 6 1.0193 -3.0463 0.9010 8 6 2.4622 -1.9881 -0.8355 9 6 2.0554 -0.7558 -1.1985 10 6 2.1068 -0.2492 -2.5034 11 1 1.5046 0.6051 -2.7750 12 6 2.9407 -0.8517 -3.4575 13 7 3.8644 -1.6950 -3.0786 14 14 2.7305 -0.4483 -5.2693 15 1 1.8569 -1.4669 -5.9051 16 1 4.0584 -0.4505 -5.9341 17 1 2.1093 0.8933 -5.4089 18 1 -0.3633 -1.0276 0.0139 19 1 -0.3635 0.5260 0.8828 20 1 -0.3633 0.5016 -0.8970 21 1 3.0154 -0.3553 1.5640 22 1 1.3353 -0.7786 2.0335 23 1 3.3683 -2.9223 2.3482 24 1 3.6227 -3.8517 0.8513 25 1 4.3801 -2.2530 1.0456 26 1 0.1575 -2.5835 0.4203 27 1 1.1733 -4.0437 0.4893 28 1 0.8408 -3.1201 1.9738 29 1 2.8740 -2.7247 -1.5096 30 1 4.4406 -2.1117 -3.7383 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116435726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:50 Heat of formation + Delta-G solvation = -12.948213 kcal Electronic energy + Delta-G solvation = -11143.566089 eV Core-core repulsion = 9323.930225 eV Total energy + Delta-G solvation = -1819.635864 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.23196 -33.49504 -31.81133 -28.58719 -26.53396 -25.92600 -24.59400 -21.40161 -18.41588 -17.54346 -15.80187 -14.87214 -14.04622 -13.69836 -12.68464 -12.42994 -12.25104 -11.74728 -11.63910 -11.42131 -11.30802 -11.15936 -10.87734 -10.56659 -10.19417 -9.96649 -9.70597 -9.28656 -9.04681 -9.01425 -8.85722 -6.99361 -6.34924 -3.99573 3.12239 3.23235 3.26384 4.16469 4.22014 5.44706 5.78777 5.87003 5.91892 6.12841 6.22592 6.43537 6.48432 6.54511 6.62088 6.65907 6.67409 6.77120 6.84465 6.94825 7.19577 7.32690 7.37552 7.44807 7.48875 7.73925 8.27328 8.64930 9.13964 9.42387 9.50490 10.61615 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.049985 B = 0.014708 C = 0.012638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.033578 B = 1903.251761 C = 2215.020240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 H 0.051 0.949 4 C -0.107 4.107 5 C -0.018 4.018 6 C -0.125 4.125 7 C -0.131 4.131 8 C -0.323 4.323 9 C 0.037 3.963 10 C -0.456 4.456 11 H 0.061 0.939 12 C 0.071 3.929 13 N -0.803 5.803 14 Si 0.898 3.102 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.267 1.267 18 H 0.055 0.945 19 H 0.033 0.967 20 H 0.048 0.952 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.029 0.971 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.030 0.970 29 H 0.120 0.880 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -0.072 4.024 4.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.145 4.145 5 C -0.018 4.018 6 C -0.183 4.183 7 C -0.188 4.188 8 C -0.345 4.345 9 C 0.036 3.964 10 C -0.488 4.488 11 H 0.080 0.920 12 C -0.143 4.143 13 N -0.431 5.431 14 Si 0.724 3.276 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.191 1.191 18 H 0.074 0.926 19 H 0.052 0.948 20 H 0.067 0.933 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.138 0.862 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.607 -0.185 3.940 4.729 hybrid contribution 0.039 0.163 -0.922 0.937 sum -2.568 -0.023 3.019 3.964 Atomic orbital electron populations 1.21781 0.96451 1.01180 0.99548 1.20833 0.94221 0.98118 0.95323 0.93083 1.22461 0.98959 0.96706 0.96342 1.19917 0.92412 0.92579 0.96876 1.21762 0.98959 1.00039 0.97533 1.21938 0.99037 0.99517 0.98303 1.22929 1.21191 0.99130 0.91298 1.18624 0.94111 0.92561 0.91126 1.18862 1.22123 1.13304 0.94489 0.92036 1.25714 0.93854 0.94615 1.00096 1.69788 1.14330 1.24139 1.34814 0.86486 0.78039 0.79488 0.83627 1.19951 1.20777 1.19128 0.92585 0.94769 0.93316 0.92871 0.93454 0.95207 0.93947 0.93230 0.92801 0.93961 0.95142 0.86226 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.11 37.16 0.34 -2.28 16 2 C -0.07 -1.50 3.39 -90.77 -0.31 -1.81 16 3 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.11 -2.22 5.70 -25.14 -0.14 -2.37 16 5 C -0.02 -0.39 0.89 -154.65 -0.14 -0.53 16 6 C -0.13 -2.52 8.51 37.16 0.32 -2.20 16 7 C -0.13 -2.55 8.40 37.16 0.31 -2.24 16 8 C -0.32 -8.51 8.27 -35.33 -0.29 -8.80 16 9 C 0.04 0.99 5.09 -104.97 -0.53 0.46 16 10 C -0.46 -12.70 9.32 -38.11 -0.36 -13.06 16 11 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 12 C 0.07 1.93 5.36 -17.26 -0.09 1.83 16 13 N -0.80 -22.38 10.87 55.57 0.60 -21.78 16 14 Si 0.90 20.20 29.59 -169.99 -5.03 15.17 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 18 H 0.06 1.11 5.47 -51.93 -0.28 0.82 16 19 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 21 H 0.05 1.08 7.91 -51.93 -0.41 0.67 16 22 H 0.05 0.87 7.65 -51.93 -0.40 0.48 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 1.06 5.50 -51.93 -0.29 0.78 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.12 3.48 6.28 -52.49 -0.33 3.15 16 30 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 LS Contribution 239.95 15.07 3.62 3.62 Total: -1.00 -27.95 239.95 -6.34 -34.29 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.64 Total: -0.30 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -0.90 Total: -30.99 kcal Atomic # 7 Polarization: -22.38 SS G_CDS: 0.60 Total: -21.78 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.95 -6.34 -34.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116435726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.342 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds