Wall clock time and date at job start Mon Mar 30 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.38683 * 2 1 4 4 C 1.54520 * 110.33755 * 122.23310 * 2 1 3 5 5 C 1.54515 * 101.98415 * 93.44099 * 4 2 1 6 6 C 1.53003 * 110.34421 * 144.29573 * 5 4 2 7 7 C 1.53000 * 110.34461 * 266.56079 * 5 4 2 8 8 C 1.51133 * 105.01198 * 25.22555 * 5 4 2 9 9 C 1.34748 * 110.40328 * 343.61011 * 8 5 4 10 10 C 1.40074 * 124.79425 * 179.87497 * 9 8 5 11 11 H 1.07996 * 119.99972 * 161.43850 * 10 9 8 12 12 C 1.40312 * 119.99861 * 341.44517 * 10 9 8 13 13 N 1.30687 * 119.99980 * 345.93094 * 12 10 9 14 14 Si 1.86808 * 119.99581 * 165.93190 * 12 10 9 15 15 H 1.48489 * 109.47057 * 265.12227 * 14 12 10 16 16 H 1.48501 * 109.46546 * 145.12208 * 14 12 10 17 17 H 1.48500 * 109.47084 * 25.12503 * 14 12 10 18 18 H 1.09001 * 109.47067 * 180.77474 * 1 2 3 19 19 H 1.08998 * 109.47887 * 300.78616 * 1 2 3 20 20 H 1.09010 * 109.46963 * 60.78457 * 1 2 3 21 21 H 1.09004 * 110.92226 * 211.60900 * 4 2 1 22 22 H 1.09003 * 110.93005 * 335.26712 * 4 2 1 23 23 H 1.09003 * 109.47156 * 60.00104 * 6 5 4 24 24 H 1.08998 * 109.46936 * 180.02562 * 6 5 4 25 25 H 1.08997 * 109.47055 * 299.99685 * 6 5 4 26 26 H 1.08995 * 109.47357 * 59.99668 * 7 5 4 27 27 H 1.09002 * 109.46753 * 180.02562 * 7 5 4 28 28 H 1.08999 * 109.46605 * 299.99675 * 7 5 4 29 29 H 1.08002 * 124.79902 * 163.48329 * 8 5 4 30 30 H 0.96997 * 119.99346 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0670 -0.7728 1.2256 5 6 2.2636 -2.1927 0.6487 6 6 3.4974 -2.8524 1.2681 7 6 1.0193 -3.0463 0.9010 8 6 2.4622 -1.9881 -0.8355 9 6 2.0554 -0.7558 -1.1985 10 6 2.1068 -0.2492 -2.5034 11 1 1.5046 0.6051 -2.7750 12 6 2.9407 -0.8517 -3.4575 13 7 3.8644 -1.6950 -3.0786 14 14 2.7305 -0.4483 -5.2693 15 1 1.8569 -1.4669 -5.9051 16 1 4.0584 -0.4505 -5.9341 17 1 2.1093 0.8933 -5.4089 18 1 -0.3633 -1.0276 0.0139 19 1 -0.3635 0.5260 0.8828 20 1 -0.3633 0.5016 -0.8970 21 1 3.0154 -0.3553 1.5640 22 1 1.3353 -0.7786 2.0335 23 1 3.3683 -2.9223 2.3482 24 1 3.6227 -3.8517 0.8513 25 1 4.3801 -2.2530 1.0456 26 1 0.1575 -2.5835 0.4203 27 1 1.1733 -4.0437 0.4893 28 1 0.8408 -3.1201 1.9738 29 1 2.8740 -2.7247 -1.5096 30 1 4.4406 -2.1117 -3.7383 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116435726.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:50 Heat of formation + Delta-G solvation = -27.656119 kcal Electronic energy + Delta-G solvation = -11144.203871 eV Core-core repulsion = 9323.930225 eV Total energy + Delta-G solvation = -1820.273647 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.00812 -35.48100 -33.54417 -30.51202 -28.13166 -27.61424 -26.51101 -23.18672 -20.29836 -19.36395 -17.76978 -16.81904 -15.77186 -15.38706 -14.43120 -14.16125 -13.92926 -13.38135 -13.30939 -13.11619 -12.99484 -12.89975 -12.75507 -12.28142 -11.83969 -11.67787 -11.51077 -11.15193 -10.96385 -10.76863 -10.72052 -9.00862 -8.38136 -6.11201 1.31737 1.37757 1.49702 2.19413 2.29692 3.41378 4.09607 4.20140 4.29386 4.52292 4.65981 4.83473 4.94207 4.95491 4.97533 5.03640 5.08188 5.16234 5.21096 5.32416 5.36010 5.45880 5.64986 5.71664 5.86176 5.90964 6.17316 6.55699 7.04540 7.36138 7.49623 8.59132 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.049985 B = 0.014708 C = 0.012638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.033578 B = 1903.251761 C = 2215.020240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 H 0.043 0.957 4 C -0.099 4.099 5 C -0.023 4.023 6 C -0.121 4.121 7 C -0.125 4.125 8 C -0.335 4.335 9 C 0.008 3.992 10 C -0.493 4.493 11 H 0.058 0.942 12 C 0.024 3.976 13 N -0.837 5.837 14 Si 0.971 3.029 15 H -0.269 1.269 16 H -0.273 1.273 17 H -0.261 1.261 18 H 0.055 0.945 19 H 0.068 0.932 20 H 0.039 0.961 21 H 0.051 0.949 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 0.118 4.968 6.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 H 0.062 0.938 4 C -0.137 4.137 5 C -0.023 4.023 6 C -0.178 4.178 7 C -0.182 4.182 8 C -0.357 4.357 9 C 0.007 3.993 10 C -0.525 4.525 11 H 0.076 0.924 12 C -0.187 4.187 13 N -0.466 5.466 14 Si 0.793 3.207 15 H -0.194 1.194 16 H -0.198 1.198 17 H -0.185 1.185 18 H 0.073 0.927 19 H 0.086 0.914 20 H 0.058 0.942 21 H 0.070 0.930 22 H 0.098 0.902 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.518 0.006 4.898 6.030 hybrid contribution 0.352 0.080 -1.201 1.254 sum -3.166 0.086 3.697 4.868 Atomic orbital electron populations 1.21704 0.94170 1.01554 1.00773 1.20852 0.96194 0.97322 0.94437 0.93812 1.22441 0.99750 0.95221 0.96272 1.19959 0.94298 0.94175 0.93849 1.21692 0.97371 0.99222 0.99547 1.21847 0.97377 0.98598 1.00395 1.23000 1.20451 0.98380 0.93894 1.19119 0.94470 0.93410 0.92332 1.19217 1.23115 1.14057 0.96106 0.92395 1.26594 0.93165 0.94272 1.04684 1.69895 1.15061 1.25153 1.36460 0.85371 0.78274 0.79420 0.77623 1.19427 1.19847 1.18457 0.92657 0.91356 0.94221 0.93017 0.90172 0.91800 0.94287 0.95042 0.93311 0.94344 0.91846 0.89894 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.11 71.98 0.66 -4.03 16 2 C -0.07 -3.08 3.39 -10.89 -0.04 -3.11 16 3 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.10 -3.89 5.70 31.63 0.18 -3.71 16 5 C -0.02 -0.96 0.89 -52.27 -0.05 -1.01 16 6 C -0.12 -4.66 8.51 71.98 0.61 -4.05 16 7 C -0.13 -4.56 8.40 71.98 0.60 -3.96 16 8 C -0.33 -17.96 8.27 25.02 0.21 -17.75 16 9 C 0.01 0.44 5.09 -20.09 -0.10 0.33 16 10 C -0.49 -28.15 9.32 23.22 0.22 -27.93 16 11 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 12 C 0.02 1.31 5.36 85.37 0.46 1.77 16 13 N -0.84 -48.08 10.87 21.89 0.24 -47.84 16 14 Si 0.97 42.04 29.59 68.60 2.03 44.07 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 18 H 0.05 2.07 5.47 -2.39 -0.01 2.05 16 19 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 20 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 21 H 0.05 2.00 7.91 -2.38 -0.02 1.99 16 22 H 0.08 2.61 7.65 -2.39 -0.02 2.59 16 23 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.81 5.50 -2.39 -0.01 1.80 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.08 5.03 6.28 -2.91 -0.02 5.01 16 30 H 0.27 14.50 8.29 -92.71 -0.77 13.73 16 Total: -1.00 -61.00 239.95 6.11 -54.89 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.09 Total: 12.32 kcal Atomic # 6 Polarization: -66.19 SS G_CDS: 2.75 Total: -63.44 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.24 Total: -47.84 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -61.00 6.11 -54.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116435726.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.232 kcal (2) G-P(sol) polarization free energy of solvation -60.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds