Wall clock time and date at job start Mon Mar 30 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31099 * 1 3 3 Si 1.86795 * 119.99829 * 2 1 4 4 H 1.48501 * 109.46955 * 274.98385 * 3 2 1 5 5 H 1.48495 * 109.47448 * 34.98173 * 3 2 1 6 6 H 1.48501 * 109.47416 * 154.98731 * 3 2 1 7 7 C 1.39299 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00025 * 173.68278 * 7 2 1 9 9 N 1.36465 * 120.00046 * 353.96021 * 7 2 1 10 10 N 1.39955 * 119.86871 * 6.03966 * 9 7 2 11 11 C 1.31355 * 120.70209 * 179.70551 * 10 9 7 12 12 N 1.39028 * 119.79578 * 180.27681 * 11 10 9 13 13 C 1.41030 * 120.40874 * 0.56779 * 11 10 9 14 14 C 1.36075 * 119.69493 * 359.71078 * 13 11 10 15 15 C 1.34804 * 119.86745 * 186.31115 * 9 7 2 16 16 O 1.22016 * 120.19668 * 0.02562 * 15 9 7 17 17 H 0.96994 * 120.00204 * 0.02562 * 1 2 3 18 18 H 0.97005 * 120.00243 * 180.28233 * 12 11 10 19 19 H 0.97001 * 120.00507 * 0.29181 * 12 11 10 20 20 H 1.07998 * 120.15512 * 179.72877 * 13 11 10 21 21 H 1.08003 * 120.33786 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 2.3871 2.1072 -1.3948 5 1 1.4990 2.6200 0.8026 6 1 3.5912 1.4121 0.5920 7 6 2.0075 -1.2064 0.0005 8 1 3.0825 -1.2093 -0.1024 9 7 1.3308 -2.3849 0.1254 10 7 -0.0687 -2.3884 0.1254 11 6 -0.7365 -3.5138 0.2388 12 7 -2.1267 -3.4960 0.2309 13 6 -0.0521 -4.7394 0.3748 14 6 1.3085 -4.7544 0.3824 15 6 2.0132 -3.5404 0.2538 16 8 3.2333 -3.5353 0.2590 17 1 -0.4850 0.8400 -0.0004 18 1 -2.6229 -4.3250 0.3185 19 1 -2.6005 -2.6548 0.1375 20 1 -0.6053 -5.6618 0.4722 21 1 1.8432 -5.6871 0.4863 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161161505.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:04 Heat of formation + Delta-G solvation = 45.537465 kcal Electronic energy + Delta-G solvation = -10617.417194 eV Core-core repulsion = 8495.518110 eV Total energy + Delta-G solvation = -2121.899083 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.32643 -36.01847 -34.51627 -32.50393 -31.22044 -28.75401 -25.63142 -23.05464 -21.32863 -18.66918 -17.09582 -15.94538 -15.07107 -14.94848 -14.43359 -14.22230 -13.90738 -12.39567 -11.98245 -11.77470 -11.67815 -11.38996 -11.00429 -10.55231 -10.20396 -9.30747 -8.80839 -8.52228 -8.03913 -6.94819 -6.65454 -4.13038 1.87778 3.01620 3.03954 3.11467 3.39165 3.66173 4.02860 4.52345 4.98112 5.31593 5.85163 5.93825 6.23129 6.98800 7.02698 7.06356 7.40983 7.75641 8.10937 8.29053 8.60718 8.75545 9.56000 9.91328 10.17197 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.048738 B = 0.017618 C = 0.013010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.363384 B = 1588.875541 C = 2151.701458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.034 3.966 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.258 4.258 8 H 0.135 0.865 9 N -0.171 5.171 10 N -0.248 5.248 11 C 0.274 3.726 12 N -0.859 5.859 13 C -0.180 4.180 14 C -0.196 4.196 15 C 0.389 3.611 16 O -0.625 6.625 17 H 0.275 0.725 18 H 0.396 0.604 19 H 0.397 0.603 20 H 0.111 0.889 21 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -0.823 0.207 5.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.185 4.185 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.395 4.395 8 H 0.152 0.848 9 N 0.030 4.970 10 N -0.083 5.083 11 C 0.021 3.979 12 N -0.412 5.412 13 C -0.211 4.211 14 C -0.227 4.227 15 C 0.197 3.803 16 O -0.516 6.516 17 H 0.086 0.914 18 H 0.224 0.776 19 H 0.225 0.775 20 H 0.129 0.871 21 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.589 0.162 0.122 4.593 hybrid contribution -0.119 -0.286 0.108 0.328 sum -4.707 -0.124 0.230 4.714 Atomic orbital electron populations 1.70227 1.06508 1.28157 1.32127 1.25883 0.95773 1.00783 0.96019 0.85703 0.79989 0.78981 0.79112 1.19364 1.19870 1.18199 1.20550 0.94024 0.81088 1.43833 0.84766 1.45619 1.01649 1.07832 1.41884 1.76484 0.89070 1.19066 1.23699 1.19089 0.86624 0.90714 1.01511 1.41332 1.01315 1.10899 1.87637 1.20970 0.94753 0.96455 1.08925 1.21693 0.93791 0.98016 1.09214 1.17288 0.88787 0.84649 0.89613 1.90730 1.12549 1.86167 1.62171 0.91358 0.77591 0.77486 0.87120 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.04 11.31 55.51 0.63 -18.41 14 2 C 0.03 0.85 5.49 -17.47 -0.10 0.75 14 3 Si 0.94 18.84 29.56 -169.99 -5.02 13.82 14 4 H -0.27 -5.26 7.11 56.52 0.40 -4.85 14 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 14 7 C -0.26 -7.25 9.61 -15.10 -0.15 -7.39 14 8 H 0.13 3.76 7.17 -52.49 -0.38 3.38 14 9 N -0.17 -4.90 3.61 -13.75 -0.05 -4.95 14 10 N -0.25 -6.56 8.88 31.36 0.28 -6.28 14 11 C 0.27 6.15 7.87 -155.15 -1.22 4.93 14 12 N -0.86 -14.65 9.08 31.34 0.28 -14.36 14 13 C -0.18 -3.80 9.91 -39.30 -0.39 -4.19 14 14 C -0.20 -4.66 10.00 -39.33 -0.39 -5.06 14 15 C 0.39 11.09 7.45 -15.22 -0.11 10.98 14 16 O -0.62 -19.42 16.69 4.90 0.08 -19.34 14 17 H 0.28 6.35 8.30 -40.82 -0.34 6.02 14 18 H 0.40 5.19 8.84 -40.82 -0.36 4.83 14 19 H 0.40 6.59 8.95 -40.82 -0.37 6.23 14 20 H 0.11 1.86 8.06 -52.49 -0.42 1.43 14 21 H 0.13 2.73 8.06 -52.48 -0.42 2.31 14 LS Contribution 200.16 15.07 3.02 3.02 Total: -1.00 -32.59 200.16 -4.23 -36.81 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -1.08 Total: 9.67 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.36 Total: 0.03 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 1.14 Total: -44.01 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.08 Total: -19.34 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -32.59 -4.23 -36.81 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161161505.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.349 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds