Wall clock time and date at job start Mon Mar 30 2020 01:44:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30688 * 1
3 3 Si 1.86798 * 119.99854 * 2 1
4 4 H 1.48502 * 109.47114 * 89.99807 * 3 2 1
5 5 H 1.48497 * 109.47162 * 209.99893 * 3 2 1
6 6 H 1.48504 * 109.47286 * 329.99581 * 3 2 1
7 7 C 1.40303 * 120.00063 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99901 * 0.02562 * 7 2 1
9 9 C 1.40076 * 119.99980 * 180.02562 * 7 2 1
10 10 C 1.35035 * 119.99748 * 175.63333 * 9 7 2
11 11 C 1.50700 * 120.00020 * 6.17263 * 10 9 7
12 12 C 1.53000 * 109.46992 * 246.35627 * 11 10 9
13 13 C 1.53000 * 109.47071 * 180.02562 * 12 11 10
14 14 C 1.52991 * 109.47390 * 60.00022 * 13 12 11
15 15 C 1.53005 * 109.47449 * 300.00214 * 14 13 12
16 16 C 1.53000 * 109.47000 * 59.99547 * 15 14 13
17 17 H 0.96999 * 120.00527 * 0.02562 * 1 2 3
18 18 H 1.07997 * 119.99693 * 355.64288 * 9 7 2
19 19 H 1.08002 * 120.00015 * 186.16755 * 10 9 7
20 20 H 1.08993 * 109.47408 * 6.36117 * 11 10 9
21 21 H 1.09003 * 109.47457 * 300.00260 * 12 11 10
22 22 H 1.08998 * 109.46772 * 60.00327 * 12 11 10
23 23 H 1.09003 * 109.46876 * 300.00229 * 13 12 11
24 24 H 1.08997 * 109.47403 * 180.02562 * 13 12 11
25 25 H 1.09004 * 109.47290 * 180.02562 * 14 13 12
26 26 H 1.09001 * 109.47374 * 59.99939 * 14 13 12
27 27 H 1.09001 * 109.46609 * 300.00194 * 15 14 13
28 28 H 1.08992 * 109.47523 * 180.02562 * 15 14 13
29 29 H 1.09001 * 109.47346 * 180.02562 * 16 15 14
30 30 H 1.09003 * 109.46876 * 60.00282 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3069 0.0000 0.0000
3 14 2.2408 1.6177 0.0000
4 1 2.4883 2.0465 1.4001
5 1 3.5384 1.4402 -0.7000
6 1 1.4383 2.6527 -0.7001
7 6 2.0084 -1.2150 0.0005
8 1 1.4684 -2.1504 0.0005
9 6 3.4092 -1.2150 0.0011
10 6 4.0843 -2.3811 0.0907
11 6 3.3373 -3.6893 0.0498
12 6 3.4605 -4.3894 1.4046
13 6 2.7027 -5.7179 1.3630
14 6 3.2974 -6.6103 0.2719
15 6 3.1743 -5.9103 -1.0830
16 6 3.9321 -4.5818 -1.0414
17 1 -0.4851 0.8400 -0.0004
18 1 3.9491 -0.2824 -0.0700
19 1 5.1596 -2.3761 0.1915
20 1 2.2860 -3.5008 -0.1676
21 1 4.5119 -4.5779 1.6220
22 1 3.0371 -3.7534 2.1820
23 1 1.6513 -5.5297 1.1455
24 1 2.7900 -6.2164 2.3283
25 1 2.7572 -7.5566 0.2419
26 1 4.3488 -6.7985 0.4893
27 1 2.1229 -5.7221 -1.3005
28 1 3.5975 -6.5462 -1.8604
29 1 3.8441 -4.0828 -2.0065
30 1 4.9835 -4.7700 -0.8238
RHF calculation, no. of doubly occupied orbitals= 34
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000205068581.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:44:41
Heat of formation + Delta-G solvation = -43.042182 kcal
Electronic energy + Delta-G solvation = -10750.124682 eV
Core-core repulsion = 8929.183845 eV
Total energy + Delta-G solvation = -1820.940836 eV
No. of doubly occupied orbitals = 34
Molecular weight
(most abundant/longest-lived isotopes) = 180.121 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.38160 -36.09800 -33.99858 -31.47101 -30.77824 -26.76067 -23.24400 -23.19764
-20.81338 -20.33717 -18.65797 -16.53652 -16.10117 -15.47286 -14.90715 -14.80733
-14.50247 -14.26224 -13.34735 -13.06031 -12.90665 -12.81610 -12.36086 -12.13545
-11.90756 -11.76116 -11.48245 -11.43566 -10.90196 -10.80260 -10.49696 -9.71092
-8.73487 -6.27907 1.20974 1.30510 1.44154 1.83248 2.15727 3.34651
3.95436 4.09300 4.09989 4.48050 4.53602 4.71515 4.76215 4.77636
4.90888 4.91782 5.04675 5.15940 5.20033 5.33806 5.35720 5.36057
5.47114 5.55223 5.76563 5.88197 5.94263 6.41109 6.51769 6.98475
7.18204 8.35359
Molecular weight = 180.12amu
Principal moments of inertia in cm(-1)
A = 0.065155 B = 0.010396 C = 0.009992
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 429.643147 B = 2692.596929 C = 2801.461686
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.871 5.871
2 C 0.027 3.973
3 Si 0.969 3.031
4 H -0.258 1.258
5 H -0.250 1.250
6 H -0.266 1.266
7 C -0.478 4.478
8 H 0.053 0.947
9 C -0.019 4.019
10 C -0.381 4.381
11 C -0.023 4.023
12 C -0.102 4.102
13 C -0.119 4.119
14 C -0.109 4.109
15 C -0.118 4.118
16 C -0.102 4.102
17 H 0.289 0.711
18 H 0.077 0.923
19 H 0.078 0.922
20 H 0.036 0.964
21 H 0.059 0.941
22 H 0.032 0.968
23 H 0.042 0.958
24 H 0.072 0.928
25 H 0.075 0.925
26 H 0.069 0.931
27 H 0.044 0.956
28 H 0.075 0.925
29 H 0.040 0.960
30 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.776 -6.523 0.269 8.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.499 5.499
2 C -0.185 4.185
3 Si 0.790 3.210
4 H -0.182 1.182
5 H -0.174 1.174
6 H -0.191 1.191
7 C -0.509 4.509
8 H 0.071 0.929
9 C -0.039 4.039
10 C -0.403 4.403
11 C -0.041 4.041
12 C -0.140 4.140
13 C -0.157 4.157
14 C -0.147 4.147
15 C -0.156 4.156
16 C -0.140 4.140
17 H 0.099 0.901
18 H 0.095 0.905
19 H 0.096 0.904
20 H 0.054 0.946
21 H 0.077 0.923
22 H 0.051 0.949
23 H 0.061 0.939
24 H 0.090 0.910
25 H 0.094 0.906
26 H 0.088 0.912
27 H 0.063 0.937
28 H 0.094 0.906
29 H 0.059 0.941
30 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 5.495 -6.408 0.267 8.446
hybrid contribution -0.167 0.923 -0.003 0.938
sum 5.328 -5.485 0.264 7.651
Atomic orbital electron populations
1.69648 1.09316 1.30962 1.39982 1.27170 0.95709 1.04818 0.90758
0.85375 0.79435 0.76097 0.80116 1.18198 1.17352 1.19116 1.19654
0.92254 0.93832 1.45129 0.92875 1.20147 0.93644 0.95960 0.94135
1.22293 0.96203 0.93487 1.28274 1.19673 0.97516 0.92793 0.94144
1.21479 0.99676 0.95645 0.97161 1.21566 0.98866 0.95716 0.99504
1.21481 1.01413 0.97923 0.93835 1.21565 0.99725 0.96181 0.98126
1.21498 0.99336 0.95239 0.97917 0.90087 0.90530 0.90379 0.94579
0.92251 0.94895 0.93901 0.90953 0.90645 0.91238 0.93697 0.90600
0.94147 0.92179
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -49.66 13.92 21.89 0.30 -49.35 16
2 C 0.03 1.46 5.52 85.37 0.47 1.94 16
3 Si 0.97 41.55 27.52 68.60 1.89 43.44 16
4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16
5 H -0.25 -10.35 6.29 99.48 0.63 -9.73 16
6 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16
7 C -0.48 -27.80 9.22 23.22 0.21 -27.58 16
8 H 0.05 3.39 5.72 -2.91 -0.02 3.38 16
9 C -0.02 -1.00 8.88 21.98 0.20 -0.80 16
10 C -0.38 -18.56 8.93 24.95 0.22 -18.33 16
11 C -0.02 -1.02 2.27 -11.54 -0.03 -1.05 16
12 C -0.10 -3.95 5.19 30.59 0.16 -3.79 16
13 C -0.12 -3.80 5.92 30.59 0.18 -3.61 16
14 C -0.11 -2.96 5.92 30.59 0.18 -2.77 16
15 C -0.12 -3.62 5.92 30.60 0.18 -3.44 16
16 C -0.10 -3.79 5.18 30.60 0.16 -3.63 16
17 H 0.29 14.79 8.29 -92.71 -0.77 14.03 16
18 H 0.08 3.77 5.25 -2.91 -0.02 3.76 16
19 H 0.08 3.56 8.06 -2.91 -0.02 3.54 16
20 H 0.04 1.88 5.38 -2.39 -0.01 1.87 16
21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16
23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16
24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
25 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16
26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16
28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16
Total: -1.00 -59.92 239.03 5.14 -54.78
By element:
Atomic # 1 Polarization: 13.20 SS G_CDS: 1.01 Total: 14.21 kcal
Atomic # 6 Polarization: -65.01 SS G_CDS: 1.94 Total: -63.08 kcal
Atomic # 7 Polarization: -49.66 SS G_CDS: 0.30 Total: -49.35 kcal
Atomic # 14 Polarization: 41.55 SS G_CDS: 1.89 Total: 43.44 kcal
Total: -59.92 5.14 -54.78 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000205068581.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.737 kcal
(2) G-P(sol) polarization free energy of solvation -59.918 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.181 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds