Wall clock time and date at job start Mon Mar 30 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86798 * 119.99854 * 2 1 4 4 H 1.48502 * 109.47114 * 89.99807 * 3 2 1 5 5 H 1.48497 * 109.47162 * 209.99893 * 3 2 1 6 6 H 1.48504 * 109.47286 * 329.99581 * 3 2 1 7 7 C 1.40303 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99901 * 0.02562 * 7 2 1 9 9 C 1.40076 * 119.99980 * 180.02562 * 7 2 1 10 10 C 1.35035 * 119.99748 * 175.63333 * 9 7 2 11 11 C 1.50700 * 120.00020 * 6.17263 * 10 9 7 12 12 C 1.53000 * 109.46992 * 246.35627 * 11 10 9 13 13 C 1.53000 * 109.47071 * 180.02562 * 12 11 10 14 14 C 1.52991 * 109.47390 * 60.00022 * 13 12 11 15 15 C 1.53005 * 109.47449 * 300.00214 * 14 13 12 16 16 C 1.53000 * 109.47000 * 59.99547 * 15 14 13 17 17 H 0.96999 * 120.00527 * 0.02562 * 1 2 3 18 18 H 1.07997 * 119.99693 * 355.64288 * 9 7 2 19 19 H 1.08002 * 120.00015 * 186.16755 * 10 9 7 20 20 H 1.08993 * 109.47408 * 6.36117 * 11 10 9 21 21 H 1.09003 * 109.47457 * 300.00260 * 12 11 10 22 22 H 1.08998 * 109.46772 * 60.00327 * 12 11 10 23 23 H 1.09003 * 109.46876 * 300.00229 * 13 12 11 24 24 H 1.08997 * 109.47403 * 180.02562 * 13 12 11 25 25 H 1.09004 * 109.47290 * 180.02562 * 14 13 12 26 26 H 1.09001 * 109.47374 * 59.99939 * 14 13 12 27 27 H 1.09001 * 109.46609 * 300.00194 * 15 14 13 28 28 H 1.08992 * 109.47523 * 180.02562 * 15 14 13 29 29 H 1.09001 * 109.47346 * 180.02562 * 16 15 14 30 30 H 1.09003 * 109.46876 * 60.00282 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4883 2.0465 1.4001 5 1 3.5384 1.4402 -0.7000 6 1 1.4383 2.6527 -0.7001 7 6 2.0084 -1.2150 0.0005 8 1 1.4684 -2.1504 0.0005 9 6 3.4092 -1.2150 0.0011 10 6 4.0843 -2.3811 0.0907 11 6 3.3373 -3.6893 0.0498 12 6 3.4605 -4.3894 1.4046 13 6 2.7027 -5.7179 1.3630 14 6 3.2974 -6.6103 0.2719 15 6 3.1743 -5.9103 -1.0830 16 6 3.9321 -4.5818 -1.0414 17 1 -0.4851 0.8400 -0.0004 18 1 3.9491 -0.2824 -0.0700 19 1 5.1596 -2.3761 0.1915 20 1 2.2860 -3.5008 -0.1676 21 1 4.5119 -4.5779 1.6220 22 1 3.0371 -3.7534 2.1820 23 1 1.6513 -5.5297 1.1455 24 1 2.7900 -6.2164 2.3283 25 1 2.7572 -7.5566 0.2419 26 1 4.3488 -6.7985 0.4893 27 1 2.1229 -5.7221 -1.3005 28 1 3.5975 -6.5462 -1.8604 29 1 3.8441 -4.0828 -2.0065 30 1 4.9835 -4.7700 -0.8238 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205068581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:41 Heat of formation + Delta-G solvation = -43.042182 kcal Electronic energy + Delta-G solvation = -10750.124682 eV Core-core repulsion = 8929.183845 eV Total energy + Delta-G solvation = -1820.940836 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.38160 -36.09800 -33.99858 -31.47101 -30.77824 -26.76067 -23.24400 -23.19764 -20.81338 -20.33717 -18.65797 -16.53652 -16.10117 -15.47286 -14.90715 -14.80733 -14.50247 -14.26224 -13.34735 -13.06031 -12.90665 -12.81610 -12.36086 -12.13545 -11.90756 -11.76116 -11.48245 -11.43566 -10.90196 -10.80260 -10.49696 -9.71092 -8.73487 -6.27907 1.20974 1.30510 1.44154 1.83248 2.15727 3.34651 3.95436 4.09300 4.09989 4.48050 4.53602 4.71515 4.76215 4.77636 4.90888 4.91782 5.04675 5.15940 5.20033 5.33806 5.35720 5.36057 5.47114 5.55223 5.76563 5.88197 5.94263 6.41109 6.51769 6.98475 7.18204 8.35359 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.065155 B = 0.010396 C = 0.009992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.643147 B = 2692.596929 C = 2801.461686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.258 1.258 5 H -0.250 1.250 6 H -0.266 1.266 7 C -0.478 4.478 8 H 0.053 0.947 9 C -0.019 4.019 10 C -0.381 4.381 11 C -0.023 4.023 12 C -0.102 4.102 13 C -0.119 4.119 14 C -0.109 4.109 15 C -0.118 4.118 16 C -0.102 4.102 17 H 0.289 0.711 18 H 0.077 0.923 19 H 0.078 0.922 20 H 0.036 0.964 21 H 0.059 0.941 22 H 0.032 0.968 23 H 0.042 0.958 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 -6.523 0.269 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.185 4.185 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.174 1.174 6 H -0.191 1.191 7 C -0.509 4.509 8 H 0.071 0.929 9 C -0.039 4.039 10 C -0.403 4.403 11 C -0.041 4.041 12 C -0.140 4.140 13 C -0.157 4.157 14 C -0.147 4.147 15 C -0.156 4.156 16 C -0.140 4.140 17 H 0.099 0.901 18 H 0.095 0.905 19 H 0.096 0.904 20 H 0.054 0.946 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.495 -6.408 0.267 8.446 hybrid contribution -0.167 0.923 -0.003 0.938 sum 5.328 -5.485 0.264 7.651 Atomic orbital electron populations 1.69648 1.09316 1.30962 1.39982 1.27170 0.95709 1.04818 0.90758 0.85375 0.79435 0.76097 0.80116 1.18198 1.17352 1.19116 1.19654 0.92254 0.93832 1.45129 0.92875 1.20147 0.93644 0.95960 0.94135 1.22293 0.96203 0.93487 1.28274 1.19673 0.97516 0.92793 0.94144 1.21479 0.99676 0.95645 0.97161 1.21566 0.98866 0.95716 0.99504 1.21481 1.01413 0.97923 0.93835 1.21565 0.99725 0.96181 0.98126 1.21498 0.99336 0.95239 0.97917 0.90087 0.90530 0.90379 0.94579 0.92251 0.94895 0.93901 0.90953 0.90645 0.91238 0.93697 0.90600 0.94147 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.66 13.92 21.89 0.30 -49.35 16 2 C 0.03 1.46 5.52 85.37 0.47 1.94 16 3 Si 0.97 41.55 27.52 68.60 1.89 43.44 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.25 -10.35 6.29 99.48 0.63 -9.73 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.48 -27.80 9.22 23.22 0.21 -27.58 16 8 H 0.05 3.39 5.72 -2.91 -0.02 3.38 16 9 C -0.02 -1.00 8.88 21.98 0.20 -0.80 16 10 C -0.38 -18.56 8.93 24.95 0.22 -18.33 16 11 C -0.02 -1.02 2.27 -11.54 -0.03 -1.05 16 12 C -0.10 -3.95 5.19 30.59 0.16 -3.79 16 13 C -0.12 -3.80 5.92 30.59 0.18 -3.61 16 14 C -0.11 -2.96 5.92 30.59 0.18 -2.77 16 15 C -0.12 -3.62 5.92 30.60 0.18 -3.44 16 16 C -0.10 -3.79 5.18 30.60 0.16 -3.63 16 17 H 0.29 14.79 8.29 -92.71 -0.77 14.03 16 18 H 0.08 3.77 5.25 -2.91 -0.02 3.76 16 19 H 0.08 3.56 8.06 -2.91 -0.02 3.54 16 20 H 0.04 1.88 5.38 -2.39 -0.01 1.87 16 21 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 22 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -59.92 239.03 5.14 -54.78 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.01 Total: 14.21 kcal Atomic # 6 Polarization: -65.01 SS G_CDS: 1.94 Total: -63.08 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.30 Total: -49.35 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.89 Total: 43.44 kcal Total: -59.92 5.14 -54.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205068581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.737 kcal (2) G-P(sol) polarization free energy of solvation -59.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds