Wall clock time and date at job start Mon Mar 30 2020 01:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48507 * 109.46751 * 274.97773 * 3 2 1 5 5 H 1.48502 * 109.47347 * 34.97680 * 3 2 1 6 6 H 1.48496 * 109.47202 * 154.97802 * 3 2 1 7 7 C 1.37872 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00448 * 188.92701 * 7 2 1 9 9 C 1.50701 * 119.99847 * 8.93574 * 7 2 1 10 10 H 1.08997 * 109.47165 * 305.33346 * 9 7 2 11 11 C 1.53006 * 109.47365 * 65.33754 * 9 7 2 12 12 C 1.52997 * 109.47403 * 119.99978 * 11 9 7 13 13 C 1.53001 * 109.47141 * 59.99966 * 12 11 9 14 14 C 1.53006 * 109.47000 * 300.00281 * 13 12 11 15 15 C 1.53000 * 109.47075 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47605 * 300.00214 * 15 14 13 17 17 C 1.53005 * 109.47050 * 299.99940 * 12 11 9 18 18 H 0.96998 * 119.99686 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46686 * 0.02562 * 11 9 7 20 20 H 1.09001 * 109.46911 * 240.00206 * 11 9 7 21 21 H 1.08998 * 109.47392 * 180.02562 * 12 11 9 22 22 H 1.09001 * 109.47004 * 59.99876 * 13 12 11 23 23 H 1.08999 * 109.46989 * 180.02562 * 13 12 11 24 24 H 1.08997 * 109.47312 * 120.00175 * 14 13 12 25 25 H 1.09003 * 109.46787 * 239.99705 * 14 13 12 26 26 H 1.08998 * 109.46788 * 179.97438 * 15 14 13 27 27 H 1.09003 * 109.46953 * 300.00329 * 16 15 14 28 28 H 1.08997 * 109.47366 * 180.02562 * 16 15 14 29 29 H 1.09000 * 109.47388 * 179.97438 * 17 12 11 30 30 H 1.08998 * 109.47042 * 300.00289 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3914 2.1072 -1.3949 5 1 1.5031 2.6201 0.8026 6 1 3.5953 1.4122 0.5922 7 6 2.0046 -1.1940 0.0005 8 1 3.0748 -1.1996 0.1457 9 6 1.2648 -2.4913 -0.2016 10 1 0.4621 -2.5698 0.5316 11 6 0.6726 -2.5264 -1.6120 12 6 1.2457 -3.7215 -2.3762 13 6 0.8895 -5.0152 -1.6412 14 6 1.4816 -4.9801 -0.2308 15 6 2.2332 -3.6633 -0.0259 16 6 3.3600 -3.5536 -1.0550 17 6 2.7673 -3.5879 -2.4652 18 1 -0.4849 0.8401 -0.0004 19 1 0.9269 -1.6048 -2.1358 20 1 -0.4114 -2.6215 -1.5486 21 1 0.8242 -3.7462 -3.3811 22 1 -0.1945 -5.1104 -1.5778 23 1 1.2981 -5.8666 -2.1854 24 1 0.6789 -5.0587 0.5024 25 1 2.1712 -5.8150 -0.1054 26 1 2.6546 -3.6382 0.9790 27 1 4.0493 -4.3886 -0.9295 28 1 3.8957 -2.6156 -0.9086 29 1 3.1757 -4.4395 -3.0092 30 1 3.0211 -2.6662 -2.9887 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213662629.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:56 Heat of formation + Delta-G solvation = -34.068048 kcal Electronic energy + Delta-G solvation = -11451.437062 eV Core-core repulsion = 9630.885374 eV Total energy + Delta-G solvation = -1820.551689 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.30508 -32.91048 -30.46789 -30.07545 -29.29032 -24.63830 -21.77986 -21.09851 -20.51144 -16.55560 -15.50362 -15.27056 -14.93064 -14.17606 -13.91254 -12.20237 -11.80292 -11.44819 -11.29990 -11.18660 -11.13812 -10.96131 -10.89920 -10.68805 -10.58969 -10.00331 -9.79788 -9.42113 -8.85968 -8.53537 -8.34995 -8.20803 -5.93204 -3.92568 3.34438 3.41868 3.44590 4.50865 5.38573 5.44272 5.53010 5.57837 5.99712 6.15089 6.21429 6.29110 6.31732 6.35266 6.40235 6.61944 6.66902 6.84094 6.86920 6.92879 7.05053 7.16612 7.28717 7.37457 7.65225 7.83757 8.06931 8.09957 8.58778 9.11187 9.69467 11.16982 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.059840 B = 0.014968 C = 0.014308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.798565 B = 1870.228272 C = 1956.497222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.053 3.947 10 H 0.029 0.971 11 C -0.084 4.084 12 C -0.090 4.090 13 C -0.107 4.107 14 C -0.112 4.112 15 C -0.079 4.079 16 C -0.102 4.102 17 C -0.101 4.101 18 H 0.258 0.742 19 H 0.056 0.944 20 H 0.034 0.966 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -6.724 -3.026 7.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.034 3.966 10 H 0.047 0.953 11 C -0.122 4.122 12 C -0.109 4.109 13 C -0.144 4.144 14 C -0.150 4.150 15 C -0.098 4.098 16 C -0.139 4.139 17 C -0.139 4.139 18 H 0.067 0.933 19 H 0.075 0.925 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.059 0.941 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.828 -6.600 -3.019 7.790 hybrid contribution 0.377 1.008 -0.060 1.077 sum 3.205 -5.593 -3.079 7.144 Atomic orbital electron populations 1.70002 1.05876 1.26200 1.50816 1.24952 0.94704 0.98835 0.95494 0.86741 0.80097 0.84251 0.77880 1.20858 1.21462 1.19968 1.21251 0.93808 0.90856 1.48645 0.92619 1.18655 0.93594 0.91463 0.92872 0.95306 1.21568 0.97513 0.94939 0.98195 1.21137 0.95599 0.96365 0.97772 1.21476 0.99617 0.97012 0.96321 1.21556 0.99072 0.97869 0.96463 1.21095 0.96379 0.95020 0.97277 1.21413 0.97271 1.00422 0.94826 1.21392 0.95547 0.99826 0.97134 0.93264 0.92512 0.94724 0.93393 0.92948 0.93634 0.92876 0.93768 0.92871 0.94597 0.91434 0.94108 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 12.91 55.43 0.72 -25.39 16 2 C 0.06 1.72 5.02 -17.82 -0.09 1.63 16 3 Si 0.88 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -13.92 7.63 -34.44 -0.26 -14.18 16 8 H 0.06 1.51 6.54 -52.49 -0.34 1.17 16 9 C 0.05 1.32 2.01 -91.74 -0.18 1.14 16 10 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 11 C -0.08 -1.99 4.84 -26.73 -0.13 -2.12 16 12 C -0.09 -1.76 3.19 -90.62 -0.29 -2.05 16 13 C -0.11 -1.88 5.71 -26.73 -0.15 -2.03 16 14 C -0.11 -2.05 5.71 -26.73 -0.15 -2.20 16 15 C -0.08 -1.67 2.69 -90.60 -0.24 -1.92 16 16 C -0.10 -1.99 5.46 -26.73 -0.15 -2.14 16 17 C -0.10 -1.89 5.71 -26.73 -0.15 -2.04 16 18 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 19 H 0.06 1.47 7.35 -51.93 -0.38 1.09 16 20 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.41 6.52 -51.93 -0.34 1.07 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 229.97 15.07 3.47 3.47 Total: -1.00 -28.27 229.97 -7.49 -35.76 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.85 Total: -4.43 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -1.80 Total: -25.92 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.72 Total: -25.39 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.27 -7.49 -35.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213662629.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.692 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds