Wall clock time and date at job start Mon Mar 30 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86801 * 120.00347 * 2 1 4 4 H 1.48497 * 109.47140 * 274.98579 * 3 2 1 5 5 H 1.48506 * 109.46727 * 34.98519 * 3 2 1 6 6 H 1.48496 * 109.47288 * 154.97903 * 3 2 1 7 7 C 1.40162 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00139 * 186.01522 * 7 2 1 9 9 C 1.39891 * 119.99770 * 6.00682 * 7 2 1 10 10 N 1.33127 * 126.69431 * 354.27733 * 9 7 2 11 11 N 1.28463 * 109.62550 * 180.22897 * 10 9 7 12 12 C 1.32678 * 110.39102 * 0.23223 * 11 10 9 13 13 N 1.36143 * 106.85530 * 359.38063 * 12 11 10 14 14 C 1.47362 * 108.29955 * 181.22510 * 13 12 11 15 15 C 1.54725 * 102.08403 * 14.79870 * 14 13 12 16 16 O 1.35416 * 141.46026 * 179.27777 * 12 11 10 17 17 H 0.97006 * 120.00104 * 359.97438 * 1 2 3 18 18 H 1.09004 * 110.80748 * 256.71873 * 14 13 12 19 19 H 1.08997 * 111.04330 * 132.98654 * 14 13 12 20 20 H 1.09005 * 110.84809 * 217.36026 * 15 14 13 21 21 H 1.09003 * 110.85298 * 93.93396 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3838 2.1072 -1.3947 5 1 1.4957 2.6199 0.8028 6 1 3.5878 1.4120 0.5921 7 6 2.0083 -1.2138 -0.0005 8 1 3.0839 -1.2165 0.0975 9 6 1.3146 -2.4219 -0.1279 10 7 -0.0068 -2.5819 -0.1497 11 7 -0.2884 -3.8291 -0.2746 12 6 0.8236 -4.5502 -0.3358 13 7 1.8651 -3.6772 -0.2554 14 6 3.1200 -4.4440 -0.3504 15 6 2.6247 -5.8117 -0.8778 16 8 1.2511 -5.8303 -0.4471 17 1 -0.4850 0.8401 0.0004 18 1 3.5835 -4.5511 0.6303 19 1 3.8085 -3.9817 -1.0577 20 1 3.1850 -6.6287 -0.4232 21 1 2.6912 -5.8555 -1.9649 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213663934.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:02 Heat of formation + Delta-G solvation = 35.790544 kcal Electronic energy + Delta-G solvation = -10649.883656 eV Core-core repulsion = 8527.561914 eV Total energy + Delta-G solvation = -2122.321742 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.30140 -39.92712 -35.58663 -34.60614 -31.03661 -30.45580 -27.30839 -24.52113 -22.71880 -22.38294 -19.43013 -18.18093 -17.66027 -17.04913 -16.13003 -15.87504 -15.06990 -14.57803 -14.47016 -13.22787 -13.09977 -13.01749 -12.84018 -12.12618 -11.95265 -11.72348 -11.26116 -10.61585 -10.57654 -9.38415 -8.55535 -6.64187 1.20646 1.42388 1.53954 1.61555 1.71840 2.20809 2.38225 2.48007 3.26970 3.43954 3.95149 4.03612 4.36074 4.59149 4.76772 4.86668 5.07189 5.28188 5.61229 6.19289 6.35073 6.75098 6.90560 8.41199 8.60541 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.077627 B = 0.013705 C = 0.011792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.611209 B = 2042.512297 C = 2373.890774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.029 3.971 3 Si 1.012 2.988 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.247 1.247 7 C -0.473 4.473 8 H 0.102 0.898 9 C 0.340 3.660 10 N -0.378 5.378 11 N -0.331 5.331 12 C 0.235 3.765 13 N -0.577 5.577 14 C 0.080 3.920 15 C 0.047 3.953 16 O -0.290 6.290 17 H 0.287 0.713 18 H 0.104 0.896 19 H 0.117 0.883 20 H 0.166 0.834 21 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.287 -3.398 -1.409 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.192 4.192 3 Si 0.830 3.170 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.170 1.170 7 C -0.514 4.514 8 H 0.120 0.880 9 C 0.097 3.903 10 N -0.224 5.224 11 N -0.183 5.183 12 C -0.069 4.069 13 N -0.290 5.290 14 C -0.042 4.042 15 C -0.028 4.028 16 O -0.195 6.195 17 H 0.098 0.902 18 H 0.122 0.878 19 H 0.135 0.865 20 H 0.184 0.816 21 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.561 -3.210 -1.341 10.174 hybrid contribution 1.329 0.232 -0.057 1.350 sum 10.889 -2.978 -1.398 11.375 Atomic orbital electron populations 1.70115 1.09450 1.30429 1.31437 1.27037 0.95685 1.04755 0.91733 0.84774 0.78724 0.74148 0.79361 1.18632 1.19349 1.17049 1.18642 0.95334 0.87506 1.49871 0.87996 1.21189 0.88944 0.83572 0.96606 1.75676 1.10183 1.03226 1.33322 1.74466 1.20923 0.99535 1.23370 1.24127 0.88578 0.82952 1.11283 1.48060 1.09174 1.07502 1.64285 1.23244 0.85308 0.90934 1.04705 1.24723 0.77771 0.98003 1.02323 1.86775 1.30466 1.16717 1.85494 0.90218 0.87762 0.86458 0.81643 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -44.96 11.97 21.87 0.26 -44.70 14 2 C 0.03 1.48 5.49 85.32 0.47 1.94 14 3 Si 1.01 37.41 29.57 68.60 2.03 39.43 14 4 H -0.26 -9.29 7.11 99.48 0.71 -8.59 14 5 H -0.27 -9.60 7.11 99.48 0.71 -8.90 14 6 H -0.25 -8.43 7.11 99.48 0.71 -7.72 14 7 C -0.47 -25.59 9.44 23.14 0.22 -25.37 14 8 H 0.10 4.89 7.86 -2.91 -0.02 4.87 14 9 C 0.34 19.88 7.72 133.48 1.03 20.91 14 10 N -0.38 -24.47 10.53 -55.36 -0.58 -25.05 14 11 N -0.33 -20.40 12.26 -172.17 -2.11 -22.51 14 12 C 0.23 12.26 9.54 179.26 1.71 13.97 14 13 N -0.58 -28.23 3.91 -631.25 -2.47 -30.70 14 14 C 0.08 2.46 8.13 86.80 0.71 3.17 14 15 C 0.05 1.20 8.07 72.57 0.59 1.79 14 16 O -0.29 -11.85 11.15 -87.10 -0.97 -12.82 14 17 H 0.29 14.65 8.30 -92.70 -0.77 13.88 14 18 H 0.10 2.76 8.14 -2.38 -0.02 2.74 14 19 H 0.12 2.99 8.14 -2.39 -0.02 2.97 14 20 H 0.17 2.46 8.14 -2.38 -0.02 2.44 14 21 H 0.10 2.14 8.14 -2.39 -0.02 2.12 14 Total: -1.00 -78.23 197.83 2.13 -76.11 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.25 Total: 3.82 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: 4.72 Total: 16.41 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -4.90 Total: -122.96 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.97 Total: -12.82 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.43 kcal Total: -78.23 2.13 -76.11 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213663934.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.897 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds