Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47149 * 2 1 4 4 C 1.50698 * 109.47238 * 240.00281 * 2 1 3 5 5 N 1.29907 * 125.08216 * 240.00420 * 4 2 1 6 6 C 1.36281 * 108.62274 * 179.97438 * 5 4 2 7 7 C 1.41257 * 126.68132 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00289 * 173.85491 * 7 6 5 9 9 C 1.39733 * 119.99743 * 353.86837 * 7 6 5 10 10 N 1.30992 * 119.99691 * 169.35829 * 9 7 6 11 11 Si 1.86790 * 120.00058 * 349.35590 * 9 7 6 12 12 H 1.48497 * 109.47432 * 84.68692 * 11 9 7 13 13 H 1.48509 * 109.47308 * 204.68730 * 11 9 7 14 14 H 1.48498 * 109.47422 * 324.68680 * 11 9 7 15 15 C 1.38795 * 106.64223 * 0.02562 * 6 5 4 16 16 O 1.34064 * 125.07931 * 59.69614 * 4 2 1 17 17 H 1.08995 * 109.47283 * 180.02562 * 1 2 3 18 18 H 1.08998 * 109.46967 * 59.99473 * 1 2 3 19 19 H 1.09007 * 109.47151 * 299.99785 * 1 2 3 20 20 H 1.08999 * 109.47337 * 120.00134 * 2 1 3 21 21 H 1.08999 * 109.46851 * 60.00435 * 3 2 1 22 22 H 1.09008 * 109.47172 * 179.97438 * 3 2 1 23 23 H 1.08998 * 109.47616 * 300.00129 * 3 2 1 24 24 H 0.97008 * 120.00020 * 180.02562 * 10 9 7 25 25 H 1.08005 * 126.74395 * 180.02562 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 7 2.7823 -1.7711 -1.2264 6 6 3.0355 -2.1300 -2.5165 7 6 3.8119 -3.2275 -2.9501 8 1 3.8617 -3.4721 -4.0008 9 6 4.5152 -3.9968 -2.0195 10 7 5.0624 -5.1292 -2.3858 11 14 4.6752 -3.4104 -0.2533 12 1 3.4741 -3.8234 0.5162 13 1 5.8868 -4.0115 0.3601 14 1 4.7919 -1.9302 -0.2317 15 6 2.3830 -1.2066 -3.3214 16 8 1.7672 -0.3454 -2.4930 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 0.5138 0.8901 20 1 1.8933 -0.5138 0.8900 21 1 1.6767 1.9563 0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9564 -0.8899 24 1 5.5504 -5.6635 -1.7397 25 1 2.3683 -1.1869 -4.4011 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213665851.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = -8.386652 kcal Electronic energy + Delta-G solvation = -10779.298575 eV Core-core repulsion = 8758.601509 eV Total energy + Delta-G solvation = -2020.697065 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.48097 -35.13861 -34.13085 -32.47078 -28.89158 -26.99392 -25.35440 -22.57048 -20.64027 -19.10090 -17.32725 -15.87826 -15.15980 -14.60730 -14.29365 -13.95247 -12.85916 -12.82133 -12.53047 -12.02732 -11.43950 -11.21803 -11.03639 -10.87960 -10.85562 -10.54208 -10.24739 -9.63753 -9.10278 -8.47572 -7.52447 -6.68802 -4.38223 2.78032 3.42478 3.43413 3.68686 4.03560 4.05918 4.43098 4.92419 5.22817 5.29590 5.43667 5.63769 5.75577 5.97186 6.02086 6.08122 6.40661 6.41316 6.71078 6.93546 7.23184 7.46432 7.59182 8.32353 8.62453 8.85325 9.32302 10.32195 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.054511 B = 0.015433 C = 0.013136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.538746 B = 1813.825428 C = 2131.029245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.004 3.996 3 C -0.145 4.145 4 C 0.175 3.825 5 N -0.521 5.521 6 C 0.155 3.845 7 C -0.435 4.435 8 H 0.093 0.907 9 C 0.085 3.915 10 N -0.828 5.828 11 Si 0.965 3.035 12 H -0.275 1.275 13 H -0.318 1.318 14 H -0.255 1.255 15 C -0.274 4.274 16 O -0.215 6.215 17 H 0.059 0.941 18 H 0.060 0.940 19 H 0.062 0.938 20 H 0.099 0.901 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.282 0.718 25 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 8.673 5.477 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.203 4.203 4 C -0.031 4.031 5 N -0.260 5.260 6 C 0.040 3.960 7 C -0.467 4.467 8 H 0.111 0.889 9 C -0.132 4.132 10 N -0.455 5.455 11 Si 0.796 3.204 12 H -0.201 1.201 13 H -0.249 1.249 14 H -0.180 1.180 15 C -0.342 4.342 16 O -0.103 6.103 17 H 0.078 0.922 18 H 0.079 0.921 19 H 0.081 0.919 20 H 0.118 0.882 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.056 8.210 5.962 11.337 hybrid contribution -0.022 0.239 -0.136 0.276 sum -5.078 8.449 5.826 11.451 Atomic orbital electron populations 1.21830 0.93778 1.02502 1.02094 1.19494 0.95864 0.95144 0.91002 1.21836 1.01682 0.94636 1.02103 1.25392 0.98056 0.94501 0.85192 1.70066 1.18062 1.13929 1.23957 1.19575 0.95953 0.94912 0.85512 1.18423 1.24322 1.07468 0.96455 0.88872 1.26046 0.91863 0.92891 1.02448 1.69727 1.27456 1.10380 1.37912 0.85291 0.75312 0.80142 0.79627 1.20068 1.24875 1.17986 1.24401 1.16068 0.98958 0.94746 1.83948 1.60544 1.49472 1.16306 0.92195 0.92070 0.91881 0.88244 0.91870 0.92239 0.92059 0.90824 0.79538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.18 37.16 0.34 -1.65 15 2 C 0.00 0.07 3.39 -91.77 -0.31 -0.24 15 3 C -0.14 -2.02 9.17 37.16 0.34 -1.67 15 4 C 0.17 3.96 6.77 -13.09 -0.09 3.87 15 5 N -0.52 -13.81 6.60 -8.65 -0.06 -13.87 15 6 C 0.16 4.32 6.39 -84.54 -0.54 3.78 15 7 C -0.43 -12.80 9.94 -37.88 -0.38 -13.18 15 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 15 9 C 0.08 2.45 5.51 -17.35 -0.10 2.36 15 10 N -0.83 -23.88 13.94 55.54 0.77 -23.10 15 11 Si 0.96 24.77 25.79 -169.99 -4.38 20.38 15 12 H -0.27 -7.09 7.11 56.52 0.40 -6.69 15 13 H -0.32 -7.82 7.11 56.52 0.40 -7.42 15 14 H -0.25 -6.67 6.46 56.52 0.36 -6.30 15 15 C -0.27 -6.85 12.28 30.94 0.38 -6.47 15 16 O -0.21 -5.04 10.72 6.03 0.06 -4.98 15 17 H 0.06 0.88 8.14 -51.93 -0.42 0.45 15 18 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.10 1.62 8.14 -51.93 -0.42 1.20 15 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.06 0.88 8.14 -51.92 -0.42 0.46 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.28 7.44 8.30 -40.82 -0.34 7.10 15 25 H 0.19 4.13 8.06 -52.48 -0.42 3.71 15 LS Contribution 221.76 15.07 3.34 3.34 Total: -1.00 -31.61 221.76 -3.59 -35.20 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -2.98 Total: -3.77 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.35 Total: -13.20 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.72 Total: -36.97 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: 0.06 Total: -4.98 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -4.38 Total: 20.38 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.61 -3.59 -35.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213665851.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.809 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds