Wall clock time and date at job start Mon Mar 30 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30177 * 126.79652 * 2 1 4 4 O 1.20923 * 111.59890 * 179.75825 * 3 2 1 5 5 C 1.34040 * 111.56882 * 0.45386 * 4 3 2 6 6 C 1.50698 * 126.77362 * 179.82458 * 5 4 3 7 7 C 1.50706 * 109.47294 * 269.68285 * 6 5 4 8 8 H 1.07999 * 119.99515 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00200 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00139 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47145 * 89.99836 * 11 9 7 13 13 H 1.48496 * 109.47547 * 210.00333 * 11 9 7 14 14 H 1.48499 * 109.47030 * 330.00237 * 11 9 7 15 15 C 1.35446 * 106.44481 * 359.56237 * 5 4 3 16 16 C 1.50702 * 128.00419 * 180.23864 * 15 5 4 17 17 H 1.09000 * 109.47072 * 269.95224 * 1 2 3 18 18 H 1.08994 * 109.47395 * 29.95415 * 1 2 3 19 19 H 1.09001 * 109.46843 * 149.95944 * 1 2 3 20 20 H 1.09001 * 109.46665 * 149.68666 * 6 5 4 21 21 H 1.09000 * 109.47722 * 29.68998 * 6 5 4 22 22 H 0.96999 * 120.00061 * 179.97438 * 10 9 7 23 23 H 1.09004 * 109.46805 * 90.00252 * 16 15 5 24 24 H 1.09001 * 109.47053 * 210.00073 * 16 15 5 25 25 H 1.08994 * 109.47420 * 330.00122 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7254 0.0047 5 6 3.6025 -0.6067 -0.0013 6 6 4.9022 -1.3693 -0.0018 7 6 5.3350 -1.6235 -1.4228 8 1 4.7295 -1.2680 -2.2434 9 6 6.5037 -2.3099 -1.6752 10 7 6.8817 -2.5313 -2.9152 11 14 7.5513 -2.9242 -0.2558 12 1 7.1200 -4.2943 0.1211 13 1 8.9777 -2.9501 -0.6681 14 1 7.3890 -2.0166 0.9083 15 6 2.3540 -1.1319 -0.0008 16 6 1.9592 -2.5863 -0.0013 17 1 -0.3633 -0.0009 1.0277 18 1 -0.3634 0.8903 -0.5131 19 1 -0.3633 -0.8896 -0.5145 20 1 4.7653 -2.3208 0.5121 21 1 5.6662 -0.7857 0.5119 22 1 7.7041 -3.0139 -3.0928 23 1 1.8645 -2.9374 1.0264 24 1 1.0049 -2.7036 -0.5147 25 1 2.7226 -3.1699 -0.5157 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213666210.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:27 Heat of formation + Delta-G solvation = 40.343252 kcal Electronic energy + Delta-G solvation = -10623.598693 eV Core-core repulsion = 8605.014715 eV Total energy + Delta-G solvation = -2018.583978 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.13605 -34.89243 -33.79318 -32.03418 -29.21829 -28.22220 -26.88457 -22.90243 -21.01051 -19.23326 -17.27777 -16.44884 -16.11298 -14.41133 -13.67345 -13.46525 -13.18277 -12.64558 -12.56777 -12.43872 -12.12244 -11.83821 -11.65169 -10.83777 -10.63130 -10.30665 -10.13767 -9.57166 -9.23878 -8.70407 -8.17294 -6.18766 -4.21086 2.28492 2.86452 3.21388 3.30275 3.31481 3.97532 4.30589 4.74430 5.07510 5.15049 5.50274 5.66624 5.70432 5.86565 6.04846 6.08815 6.31144 6.43050 6.48033 6.71183 6.88301 6.99490 7.46465 8.33120 8.83735 8.99232 9.37844 10.93712 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.064182 B = 0.011601 C = 0.011269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.151725 B = 2413.009169 C = 2484.195708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.011 3.989 3 N -0.389 5.389 4 O 0.086 5.914 5 C 0.036 3.964 6 C 0.056 3.944 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.892 5.892 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.263 1.263 15 C -0.234 4.234 16 C -0.067 4.067 17 H 0.072 0.928 18 H 0.069 0.931 19 H 0.076 0.924 20 H 0.049 0.951 21 H 0.043 0.957 22 H 0.267 0.733 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 -0.100 7.011 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.148 4.148 3 N -0.099 5.099 4 O 0.025 5.975 5 C -0.027 4.027 6 C 0.018 3.982 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.127 4.127 10 N -0.530 5.530 11 Si 0.702 3.298 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.187 1.187 15 C -0.238 4.238 16 C -0.124 4.124 17 H 0.091 0.909 18 H 0.088 0.912 19 H 0.095 0.905 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.225 1.148 6.888 10.790 hybrid contribution 0.561 -1.117 0.500 1.346 sum -7.665 0.031 7.388 10.646 Atomic orbital electron populations 1.20040 0.86894 1.03057 1.02496 1.23318 0.98274 0.89347 1.03894 1.73739 0.89776 1.24389 1.21946 1.84740 1.20961 1.23727 1.68050 1.24898 0.99039 0.82338 0.96465 1.18441 0.86285 0.93505 0.99929 1.20778 1.08238 1.37366 0.89725 0.90583 1.24916 0.96954 0.95156 0.95713 1.69879 1.23729 1.40625 1.18746 0.86828 0.80079 0.79829 0.83021 1.19846 1.20878 1.18703 1.20811 0.91646 0.97531 1.13836 1.19970 1.01645 0.89432 1.01328 0.90893 0.91184 0.90523 0.93294 0.93916 0.92271 0.92221 0.92146 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.39 36.01 0.37 -0.53 15 2 C 0.01 0.20 7.33 -82.10 -0.60 -0.40 15 3 N -0.39 -8.24 12.07 33.42 0.40 -7.84 15 4 O 0.09 1.94 11.20 17.18 0.19 2.13 15 5 C 0.04 0.80 6.68 -35.31 -0.24 0.56 15 6 C 0.06 1.32 4.41 -29.03 -0.13 1.19 15 7 C -0.52 -14.51 9.65 -34.44 -0.33 -14.84 15 8 H 0.08 2.34 7.98 -52.49 -0.42 1.93 15 9 C 0.08 2.11 5.47 -17.82 -0.10 2.01 15 10 N -0.89 -26.57 13.96 55.43 0.77 -25.80 15 11 Si 0.88 20.30 27.47 -169.99 -4.67 15.63 15 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 14 H -0.26 -5.79 6.54 56.52 0.37 -5.42 15 15 C -0.23 -4.61 6.32 -104.43 -0.66 -5.27 15 16 C -0.07 -1.08 10.13 36.01 0.36 -0.71 15 17 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 18 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 19 H 0.08 0.89 7.66 -51.93 -0.40 0.50 15 20 H 0.05 1.07 7.48 -51.93 -0.39 0.68 15 21 H 0.04 0.98 7.20 -51.93 -0.37 0.60 15 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.06 0.84 7.66 -51.93 -0.40 0.44 15 25 H 0.08 1.41 8.08 -51.93 -0.42 0.99 15 LS Contribution 224.62 15.07 3.38 3.38 Total: -1.00 -30.24 224.62 -4.06 -34.30 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -2.83 Total: -3.82 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -1.32 Total: -18.00 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 1.18 Total: -33.64 kcal Atomic # 8 Polarization: 1.94 SS G_CDS: 0.19 Total: 2.13 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -30.24 -4.06 -34.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213666210.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.642 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds