Wall clock time and date at job start Mon Mar 30 2020 02:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30177 * 126.79652 * 2 1 4 4 O 1.20923 * 111.59890 * 179.75825 * 3 2 1 5 5 C 1.34040 * 111.56882 * 0.45386 * 4 3 2 6 6 C 1.50698 * 126.77362 * 179.82458 * 5 4 3 7 7 C 1.50706 * 109.47294 * 269.68285 * 6 5 4 8 8 H 1.07999 * 119.99515 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00176 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00200 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00139 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47145 * 89.99836 * 11 9 7 13 13 H 1.48496 * 109.47547 * 210.00333 * 11 9 7 14 14 H 1.48499 * 109.47030 * 330.00237 * 11 9 7 15 15 C 1.35446 * 106.44481 * 359.56237 * 5 4 3 16 16 C 1.50702 * 128.00419 * 180.23864 * 15 5 4 17 17 H 1.09000 * 109.47072 * 269.95224 * 1 2 3 18 18 H 1.08994 * 109.47395 * 29.95415 * 1 2 3 19 19 H 1.09001 * 109.46843 * 149.95944 * 1 2 3 20 20 H 1.09001 * 109.46665 * 149.68666 * 6 5 4 21 21 H 1.09000 * 109.47722 * 29.68998 * 6 5 4 22 22 H 0.96999 * 120.00061 * 179.97438 * 10 9 7 23 23 H 1.09004 * 109.46805 * 90.00252 * 16 15 5 24 24 H 1.09001 * 109.47053 * 210.00073 * 16 15 5 25 25 H 1.08994 * 109.47420 * 330.00122 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7254 0.0047 5 6 3.6025 -0.6067 -0.0013 6 6 4.9022 -1.3693 -0.0018 7 6 5.3350 -1.6235 -1.4228 8 1 4.7295 -1.2680 -2.2434 9 6 6.5037 -2.3099 -1.6752 10 7 6.8817 -2.5313 -2.9152 11 14 7.5513 -2.9242 -0.2558 12 1 7.1200 -4.2943 0.1211 13 1 8.9777 -2.9501 -0.6681 14 1 7.3890 -2.0166 0.9083 15 6 2.3540 -1.1319 -0.0008 16 6 1.9592 -2.5863 -0.0013 17 1 -0.3633 -0.0009 1.0277 18 1 -0.3634 0.8903 -0.5131 19 1 -0.3633 -0.8896 -0.5145 20 1 4.7653 -2.3208 0.5121 21 1 5.6662 -0.7857 0.5119 22 1 7.7041 -3.0139 -3.0928 23 1 1.8645 -2.9374 1.0264 24 1 1.0049 -2.7036 -0.5147 25 1 2.7226 -3.1699 -0.5157 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213666210.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:27 Heat of formation + Delta-G solvation = 20.829152 kcal Electronic energy + Delta-G solvation = -10624.444888 eV Core-core repulsion = 8605.014715 eV Total energy + Delta-G solvation = -2019.430173 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.70339 -36.44844 -35.60024 -33.90735 -30.90204 -29.54534 -28.42387 -24.87774 -22.51026 -20.81605 -19.23126 -18.22908 -17.74242 -16.33577 -15.33910 -14.93374 -14.44386 -14.33021 -13.94544 -13.75819 -13.54236 -13.51397 -13.02938 -12.56858 -12.47185 -11.99185 -11.74882 -11.71533 -10.81806 -10.72417 -9.80894 -8.33357 -6.42880 0.63864 1.37409 1.40430 1.43270 1.54296 2.34474 2.34740 3.01338 3.38956 3.69155 4.08317 4.33988 4.56554 4.69867 4.79701 4.84203 4.87170 4.94858 5.04425 5.15134 5.23368 5.41023 5.53703 6.15231 6.60796 7.20623 7.38034 8.83150 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.064182 B = 0.011601 C = 0.011269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.151725 B = 2413.009169 C = 2484.195708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.019 3.981 3 N -0.410 5.410 4 O 0.057 5.943 5 C -0.001 4.001 6 C 0.064 3.936 7 C -0.534 4.534 8 H 0.023 0.977 9 C 0.016 3.984 10 N -0.944 5.944 11 Si 0.952 3.048 12 H -0.255 1.255 13 H -0.283 1.283 14 H -0.241 1.241 15 C -0.230 4.230 16 C -0.067 4.067 17 H 0.099 0.901 18 H 0.077 0.923 19 H 0.099 0.901 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.271 0.729 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -1.103 9.040 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 N -0.124 5.124 4 O 0.000 6.000 5 C -0.064 4.064 6 C 0.026 3.974 7 C -0.571 4.571 8 H 0.042 0.958 9 C -0.182 4.182 10 N -0.583 5.583 11 Si 0.774 3.226 12 H -0.179 1.179 13 H -0.209 1.209 14 H -0.165 1.165 15 C -0.234 4.234 16 C -0.124 4.124 17 H 0.117 0.883 18 H 0.096 0.904 19 H 0.118 0.882 20 H 0.089 0.911 21 H 0.066 0.934 22 H 0.080 0.920 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.346 0.146 8.925 12.924 hybrid contribution 0.780 -0.760 -0.220 1.111 sum -8.567 -0.614 8.705 12.229 Atomic orbital electron populations 1.20307 0.82897 1.04618 1.04661 1.24165 1.00597 0.88139 1.01185 1.73727 0.89658 1.25607 1.23373 1.84696 1.21939 1.24025 1.69351 1.24903 0.99715 0.82686 0.99130 1.18267 0.87238 0.94777 0.97095 1.20928 1.08050 1.37305 0.90859 0.95817 1.25938 0.98306 0.95072 0.98886 1.70040 1.24671 1.41950 1.21642 0.85635 0.77441 0.80196 0.79366 1.17913 1.20850 1.16460 1.21394 0.90863 0.99546 1.11580 1.20111 1.02257 0.86681 1.03301 0.88253 0.90416 0.88198 0.91051 0.93445 0.91956 0.89318 0.89349 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.39 71.24 0.74 -0.83 15 2 C 0.02 0.66 7.33 43.58 0.32 0.98 15 3 N -0.41 -17.24 12.07 -49.57 -0.60 -17.84 15 4 O 0.06 2.60 11.20 71.63 0.80 3.41 15 5 C 0.00 -0.07 6.68 25.04 0.17 0.10 15 6 C 0.06 2.99 4.41 29.10 0.13 3.11 15 7 C -0.53 -30.45 9.65 25.60 0.25 -30.21 15 8 H 0.02 1.54 7.98 -2.91 -0.02 1.52 15 9 C 0.02 0.92 5.47 84.65 0.46 1.38 15 10 N -0.94 -57.79 13.96 21.44 0.30 -57.49 15 11 Si 0.95 41.26 27.47 68.60 1.88 43.14 15 12 H -0.25 -10.28 7.11 99.48 0.71 -9.57 15 13 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 14 H -0.24 -9.57 6.54 99.48 0.65 -8.92 15 15 C -0.23 -8.72 6.32 -19.74 -0.12 -8.85 15 16 C -0.07 -1.97 10.13 71.24 0.72 -1.25 15 17 H 0.10 1.84 8.14 -2.39 -0.02 1.83 15 18 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 19 H 0.10 1.87 7.66 -2.39 -0.02 1.86 15 20 H 0.07 2.97 7.48 -2.39 -0.02 2.95 15 21 H 0.05 2.13 7.20 -2.39 -0.02 2.12 15 22 H 0.27 15.34 8.31 -92.71 -0.77 14.57 15 23 H 0.09 2.14 8.14 -2.38 -0.02 2.12 15 24 H 0.09 2.11 7.66 -2.39 -0.02 2.09 15 25 H 0.06 2.02 8.08 -2.39 -0.02 2.01 15 Total: -1.00 -67.72 224.62 6.17 -61.55 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.12 Total: 2.78 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 2.66 Total: -35.55 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -0.30 Total: -75.32 kcal Atomic # 8 Polarization: 2.60 SS G_CDS: 0.80 Total: 3.41 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Total: -67.72 6.17 -61.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213666210.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.376 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds