Wall clock time and date at job start Mon Mar 30 2020 02:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38829 * 120.71821 * 2 1 4 4 C 1.38821 * 119.60263 * 179.72263 * 3 2 1 5 5 N 1.31389 * 121.09407 * 0.55589 * 4 3 2 6 6 C 1.33637 * 121.54243 * 359.72030 * 5 4 3 7 7 C 1.41242 * 119.86006 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99931 * 173.67145 * 7 6 5 9 9 C 1.40049 * 119.99857 * 353.66746 * 7 6 5 10 10 N 1.30743 * 119.99972 * 6.28697 * 9 7 6 11 11 Si 1.86797 * 120.00006 * 186.28065 * 9 7 6 12 12 H 1.48504 * 109.46838 * 94.98512 * 11 9 7 13 13 H 1.48495 * 109.47191 * 214.98785 * 11 9 7 14 14 H 1.48495 * 109.47210 * 334.98970 * 11 9 7 15 15 C 1.38507 * 120.71848 * 180.26776 * 2 1 3 16 16 F 1.35101 * 120.54322 * 359.97438 * 15 2 1 17 17 H 1.08997 * 109.47677 * 269.72705 * 1 2 3 18 18 H 1.09003 * 109.47036 * 149.72860 * 1 2 3 19 19 H 1.09004 * 109.47241 * 29.73071 * 1 2 3 20 20 H 1.08000 * 120.19328 * 359.96960 * 3 2 1 21 21 H 1.08004 * 119.44903 * 180.26847 * 4 3 2 22 22 H 0.97004 * 119.99835 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2161 1.1935 0.0000 4 6 3.6040 1.1665 0.0058 5 7 4.2606 0.0284 0.0005 6 6 3.6234 -1.1463 -0.0052 7 6 4.3648 -2.3484 -0.0114 8 1 3.8570 -3.2965 0.0871 9 6 5.7583 -2.3110 -0.1454 10 7 6.3849 -1.1634 -0.1411 11 14 6.7219 -3.9005 -0.3301 12 1 6.9454 -4.1792 -1.7715 13 1 8.0315 -3.7682 0.3575 14 1 5.9548 -5.0178 0.2769 15 6 2.2144 -1.1907 -0.0056 16 9 1.5649 -2.3753 -0.0106 17 1 -0.3634 -0.0049 1.0276 18 1 -0.3633 -0.8876 -0.5181 19 1 -0.3634 0.8924 -0.5097 20 1 1.6910 2.1373 -0.0005 21 1 4.1532 2.0965 0.0102 22 1 7.3501 -1.1375 -0.2343 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238468186.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:29 Heat of formation + Delta-G solvation = -26.580371 kcal Electronic energy + Delta-G solvation = -10428.820046 eV Core-core repulsion = 8283.873736 eV Total energy + Delta-G solvation = -2144.946309 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -47.27316 -38.05533 -33.95004 -32.10845 -29.69884 -26.58037 -25.67989 -21.38106 -20.85757 -17.19534 -16.08040 -15.75734 -14.87021 -14.29141 -14.15773 -12.87007 -12.60825 -12.33290 -12.03476 -11.83235 -11.72302 -11.16316 -11.11274 -10.81945 -10.55042 -9.90872 -9.41671 -8.02528 -7.73349 -7.53886 -6.53129 -4.59889 2.60674 2.74695 3.05561 3.10548 3.13300 3.89496 4.63480 5.66249 5.70027 5.78386 5.88325 6.17671 6.22376 6.39627 6.46030 6.78282 7.06721 7.25545 7.39460 7.49818 7.89173 8.15354 8.55477 8.78632 9.94129 10.19411 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.061215 B = 0.014918 C = 0.012085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.290817 B = 1876.513317 C = 2316.366013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.059 4.059 3 C -0.301 4.301 4 C 0.120 3.880 5 N -0.473 5.473 6 C 0.236 3.764 7 C -0.421 4.421 8 H 0.090 0.910 9 C 0.068 3.932 10 N -0.710 5.710 11 Si 0.913 3.087 12 H -0.268 1.268 13 H -0.274 1.274 14 H -0.259 1.259 15 C -0.080 4.080 16 F -0.159 7.159 17 H 0.061 0.939 18 H 0.059 0.941 19 H 0.059 0.941 20 H 0.101 0.899 21 H 0.125 0.875 22 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.798 0.318 -0.167 2.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.066 4.066 3 C -0.325 4.325 4 C -0.046 4.046 5 N -0.185 5.185 6 C 0.111 3.889 7 C -0.451 4.451 8 H 0.108 0.892 9 C -0.158 4.158 10 N -0.331 5.331 11 Si 0.736 3.264 12 H -0.193 1.193 13 H -0.199 1.199 14 H -0.183 1.183 15 C -0.104 4.104 16 F -0.138 7.138 17 H 0.079 0.921 18 H 0.078 0.922 19 H 0.078 0.922 20 H 0.119 0.881 21 H 0.142 0.858 22 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.685 0.334 -0.173 1.727 hybrid contribution -0.614 -0.701 -0.099 0.937 sum -2.300 -0.367 -0.272 2.345 Atomic orbital electron populations 1.20567 0.92412 1.01648 1.01337 1.19730 0.94914 0.92586 0.99376 1.21082 0.95279 0.95730 1.20384 1.22576 0.90844 0.96896 0.94244 1.68829 1.36293 0.96006 1.17407 1.18698 0.86480 0.93018 0.90713 1.19659 0.91614 0.92958 1.40889 0.89224 1.26096 0.98319 0.97804 0.93611 1.70131 1.09544 1.25949 1.27438 0.86218 0.78987 0.81778 0.79376 1.19272 1.19920 1.18298 1.18627 0.91741 0.79803 1.20181 1.91241 1.81536 1.45708 1.95340 0.92056 0.92243 0.92230 0.88067 0.85772 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.90 36.00 0.36 -1.53 14 2 C -0.06 -1.38 5.92 -104.31 -0.62 -2.00 14 3 C -0.30 -6.78 9.82 -39.15 -0.38 -7.17 14 4 C 0.12 2.91 11.18 -17.53 -0.20 2.71 14 5 N -0.47 -13.19 7.89 -11.07 -0.09 -13.28 14 6 C 0.24 6.72 6.55 -84.91 -0.56 6.16 14 7 C -0.42 -11.66 8.98 -37.76 -0.34 -11.99 14 8 H 0.09 2.39 7.45 -52.49 -0.39 2.00 14 9 C 0.07 1.75 5.49 -17.34 -0.10 1.65 14 10 N -0.71 -18.88 11.49 55.55 0.64 -18.24 14 11 Si 0.91 18.73 29.56 -169.99 -5.03 13.71 14 12 H -0.27 -5.41 7.11 56.52 0.40 -5.01 14 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 14 14 H -0.26 -5.26 7.11 56.52 0.40 -4.86 14 15 C -0.08 -2.10 7.28 -38.45 -0.28 -2.38 14 16 F -0.16 -4.05 15.91 2.25 0.04 -4.01 14 17 H 0.06 1.03 8.14 -51.93 -0.42 0.61 14 18 H 0.06 1.07 7.72 -51.93 -0.40 0.67 14 19 H 0.06 0.95 8.10 -51.93 -0.42 0.53 14 20 H 0.10 1.95 8.06 -52.49 -0.42 1.53 14 21 H 0.12 2.61 8.06 -52.48 -0.42 2.18 14 22 H 0.28 6.56 8.29 -40.82 -0.34 6.22 14 LS Contribution 207.11 15.07 3.12 3.12 Total: -1.00 -29.38 207.11 -5.04 -34.42 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -1.62 Total: -1.16 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.11 Total: -14.55 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.55 Total: -31.52 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -29.38 -5.04 -34.42 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238468186.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.839 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds