Wall clock time and date at job start Mon Mar 30 2020 02:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38829 * 120.71821 * 2 1 4 4 C 1.38821 * 119.60263 * 179.72263 * 3 2 1 5 5 N 1.31389 * 121.09407 * 0.55589 * 4 3 2 6 6 C 1.33637 * 121.54243 * 359.72030 * 5 4 3 7 7 C 1.41242 * 119.86006 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99931 * 173.67145 * 7 6 5 9 9 C 1.40049 * 119.99857 * 353.66746 * 7 6 5 10 10 N 1.30743 * 119.99972 * 6.28697 * 9 7 6 11 11 Si 1.86797 * 120.00006 * 186.28065 * 9 7 6 12 12 H 1.48504 * 109.46838 * 94.98512 * 11 9 7 13 13 H 1.48495 * 109.47191 * 214.98785 * 11 9 7 14 14 H 1.48495 * 109.47210 * 334.98970 * 11 9 7 15 15 C 1.38507 * 120.71848 * 180.26776 * 2 1 3 16 16 F 1.35101 * 120.54322 * 359.97438 * 15 2 1 17 17 H 1.08997 * 109.47677 * 269.72705 * 1 2 3 18 18 H 1.09003 * 109.47036 * 149.72860 * 1 2 3 19 19 H 1.09004 * 109.47241 * 29.73071 * 1 2 3 20 20 H 1.08000 * 120.19328 * 359.96960 * 3 2 1 21 21 H 1.08004 * 119.44903 * 180.26847 * 4 3 2 22 22 H 0.97004 * 119.99835 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2161 1.1935 0.0000 4 6 3.6040 1.1665 0.0058 5 7 4.2606 0.0284 0.0005 6 6 3.6234 -1.1463 -0.0052 7 6 4.3648 -2.3484 -0.0114 8 1 3.8570 -3.2965 0.0871 9 6 5.7583 -2.3110 -0.1454 10 7 6.3849 -1.1634 -0.1411 11 14 6.7219 -3.9005 -0.3301 12 1 6.9454 -4.1792 -1.7715 13 1 8.0315 -3.7682 0.3575 14 1 5.9548 -5.0178 0.2769 15 6 2.2144 -1.1907 -0.0056 16 9 1.5649 -2.3753 -0.0106 17 1 -0.3634 -0.0049 1.0276 18 1 -0.3633 -0.8876 -0.5181 19 1 -0.3634 0.8924 -0.5097 20 1 1.6910 2.1373 -0.0005 21 1 4.1532 2.0965 0.0102 22 1 7.3501 -1.1375 -0.2343 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238468186.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:29 Heat of formation + Delta-G solvation = -44.585425 kcal Electronic energy + Delta-G solvation = -10429.600803 eV Core-core repulsion = 8283.873736 eV Total energy + Delta-G solvation = -2145.727067 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.24215 -39.97403 -35.84186 -33.92198 -31.64560 -28.29163 -27.60890 -23.30398 -22.71878 -19.13453 -18.00815 -17.67091 -16.75893 -16.23638 -15.88212 -14.64732 -14.27068 -14.14016 -13.68061 -13.63425 -13.52510 -12.89116 -12.79793 -12.64866 -12.26037 -11.73856 -11.26042 -9.88750 -9.67654 -9.51555 -8.43115 -6.62502 0.69408 0.88493 1.37545 1.49416 1.53071 2.18946 2.72597 3.68995 3.86563 4.11199 4.19063 4.50428 4.67576 4.78185 4.88217 5.06456 5.17272 5.37046 5.52783 5.65381 5.99343 6.15856 6.59921 6.80622 7.99281 8.32798 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.061215 B = 0.014918 C = 0.012085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.290817 B = 1876.513317 C = 2316.366013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.059 4.059 3 C -0.289 4.289 4 C 0.104 3.896 5 N -0.507 5.507 6 C 0.204 3.796 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.026 3.974 10 N -0.746 5.746 11 Si 0.992 3.008 12 H -0.260 1.260 13 H -0.259 1.259 14 H -0.258 1.258 15 C -0.118 4.118 16 F -0.162 7.162 17 H 0.080 0.920 18 H 0.058 0.942 19 H 0.091 0.909 20 H 0.144 0.856 21 H 0.154 0.846 22 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.330 0.869 -0.267 3.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.066 4.066 3 C -0.311 4.311 4 C -0.061 4.061 5 N -0.220 5.220 6 C 0.079 3.921 7 C -0.493 4.493 8 H 0.101 0.899 9 C -0.197 4.197 10 N -0.367 5.367 11 Si 0.811 3.189 12 H -0.185 1.185 13 H -0.183 1.183 14 H -0.182 1.182 15 C -0.142 4.142 16 F -0.142 7.142 17 H 0.098 0.902 18 H 0.077 0.923 19 H 0.110 0.890 20 H 0.162 0.838 21 H 0.171 0.829 22 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.238 0.909 -0.271 2.431 hybrid contribution -0.555 -0.713 -0.056 0.906 sum -2.793 0.195 -0.327 2.819 Atomic orbital electron populations 1.20654 0.88656 1.03259 1.02998 1.20337 0.97750 0.91550 0.96960 1.21543 0.94763 0.97240 1.17568 1.23185 0.92345 0.96975 0.93558 1.68777 1.37702 0.96831 1.18719 1.19101 0.87884 0.93660 0.91489 1.19928 0.93209 0.92839 1.43341 0.89851 1.27010 0.98499 1.01699 0.92513 1.70182 1.10366 1.28233 1.27963 0.85055 0.77524 0.76669 0.79637 1.18478 1.18328 1.18193 1.18891 0.91716 0.80986 1.22585 1.91210 1.81347 1.46037 1.95592 0.90170 0.92270 0.89043 0.83809 0.82924 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.30 9.90 71.23 0.70 -2.60 14 2 C -0.06 -2.63 5.92 -19.66 -0.12 -2.75 14 3 C -0.29 -12.19 9.82 22.55 0.22 -11.97 14 4 C 0.10 4.92 11.18 84.90 0.95 5.87 14 5 N -0.51 -28.68 7.89 -188.93 -1.49 -30.17 14 6 C 0.20 11.90 6.55 40.28 0.26 12.17 14 7 C -0.46 -26.53 8.98 23.45 0.21 -26.32 14 8 H 0.08 4.66 7.45 -2.91 -0.02 4.63 14 9 C 0.03 1.33 5.49 85.29 0.47 1.80 14 10 N -0.75 -40.35 11.49 21.84 0.25 -40.10 14 11 Si 0.99 38.75 29.56 68.60 2.03 40.77 14 12 H -0.26 -9.77 7.11 99.48 0.71 -9.06 14 13 H -0.26 -9.40 7.11 99.48 0.71 -8.69 14 14 H -0.26 -9.90 7.11 99.48 0.71 -9.20 14 15 C -0.12 -6.30 7.28 23.00 0.17 -6.13 14 16 F -0.16 -8.43 15.91 44.97 0.72 -7.71 14 17 H 0.08 2.40 8.14 -2.39 -0.02 2.38 14 18 H 0.06 1.98 7.72 -2.39 -0.02 1.96 14 19 H 0.09 2.47 8.10 -2.39 -0.02 2.45 14 20 H 0.14 4.82 8.06 -2.91 -0.02 4.79 14 21 H 0.15 6.12 8.06 -2.91 -0.02 6.09 14 22 H 0.29 13.68 8.29 -92.71 -0.77 12.91 14 Total: -1.00 -64.46 207.11 5.60 -58.86 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.23 Total: 8.28 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: 2.87 Total: -29.93 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -1.24 Total: -70.27 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 0.72 Total: -7.71 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.77 kcal Total: -64.46 5.60 -58.86 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238468186.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.273 kcal (2) G-P(sol) polarization free energy of solvation -64.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds