Wall clock time and date at job start Mon Mar 30 2020 02:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32079 * 119.35987 * 2 1 4 4 C 1.31454 * 122.00876 * 180.27827 * 3 2 1 5 5 C 1.40758 * 120.45715 * 359.97438 * 4 3 2 6 6 C 1.41413 * 120.65278 * 180.02562 * 5 4 3 7 7 H 1.07999 * 119.99772 * 23.40606 * 6 5 4 8 8 C 1.39944 * 120.00494 * 203.40464 * 6 5 4 9 9 N 1.30821 * 119.99604 * 17.52102 * 8 6 5 10 10 Si 1.86801 * 120.00258 * 197.51743 * 8 6 5 11 11 H 1.48495 * 109.46942 * 90.00207 * 10 8 6 12 12 H 1.48495 * 109.46927 * 210.00120 * 10 8 6 13 13 H 1.48497 * 109.47234 * 330.00101 * 10 8 6 14 14 C 1.41025 * 118.70276 * 0.02562 * 5 4 3 15 15 C 1.38268 * 118.17988 * 359.97438 * 14 5 4 16 16 F 1.35100 * 120.31319 * 180.02562 * 15 14 5 17 17 H 1.08996 * 109.47019 * 269.73488 * 1 2 3 18 18 H 1.08997 * 109.46911 * 29.73324 * 1 2 3 19 19 H 1.09002 * 109.46871 * 149.73283 * 1 2 3 20 20 H 1.08002 * 119.77177 * 179.97438 * 4 3 2 21 21 H 0.97000 * 120.00289 * 179.97438 * 9 8 6 22 22 H 1.08001 * 120.91148 * 180.02562 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1546 1.1511 0.0000 4 6 3.4677 1.2119 -0.0054 5 6 4.2365 0.0328 -0.0109 6 6 5.6493 0.0934 -0.0162 7 1 6.1535 0.9732 0.3553 8 6 6.3943 -0.9868 -0.5028 9 7 5.8210 -1.8905 -1.2552 10 14 8.2071 -1.1381 -0.0781 11 1 8.3581 -1.9194 1.1756 12 1 8.9179 -1.8315 -1.1822 13 1 8.7862 0.2163 0.1098 14 6 3.5703 -1.2101 -0.0111 15 6 2.1876 -1.2099 -0.0052 16 9 1.5055 -2.3760 -0.0046 17 1 -0.3633 -0.0048 1.0276 18 1 -0.3633 0.8923 -0.5097 19 1 -0.3633 -0.8876 -0.5180 20 1 3.9601 2.1732 -0.0056 21 1 6.3374 -2.6390 -1.5929 22 1 4.1249 -2.1369 -0.0148 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238468666.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:45 Heat of formation + Delta-G solvation = -53.150757 kcal Electronic energy + Delta-G solvation = -10340.933776 eV Core-core repulsion = 8194.835288 eV Total energy + Delta-G solvation = -2146.098487 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.68952 -40.19710 -36.22722 -33.15619 -32.08030 -29.69368 -26.26877 -23.84366 -22.70731 -19.62646 -17.92146 -17.53196 -16.80186 -16.56861 -16.33730 -14.74395 -14.51358 -14.41825 -13.77520 -13.58665 -13.28045 -13.07105 -12.84734 -12.66201 -12.21432 -11.92005 -11.25116 -10.27318 -10.11582 -9.46506 -8.80216 -6.56923 0.51200 0.79263 1.39053 1.49852 1.54453 2.14729 2.56378 3.45973 3.59317 3.92582 4.26767 4.57385 4.65720 4.87062 4.90881 5.07720 5.12017 5.23053 5.45722 5.75814 5.90634 6.37003 6.59611 6.62231 7.50315 8.13211 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.070240 B = 0.013051 C = 0.011342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.538490 B = 2144.993867 C = 2468.083309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.061 4.061 3 N -0.450 5.450 4 C -0.029 4.029 5 C 0.053 3.947 6 C -0.464 4.464 7 H 0.101 0.899 8 C 0.032 3.968 9 N -0.814 5.814 10 Si 0.995 3.005 11 H -0.262 1.262 12 H -0.268 1.268 13 H -0.249 1.249 14 C -0.202 4.202 15 C 0.057 3.943 16 F -0.152 7.152 17 H 0.070 0.930 18 H 0.073 0.927 19 H 0.066 0.934 20 H 0.154 0.846 21 H 0.296 0.704 22 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -0.004 1.575 1.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.199 4.199 3 N -0.158 5.158 4 C -0.193 4.193 5 C 0.049 3.951 6 C -0.492 4.492 7 H 0.119 0.881 8 C -0.185 4.185 9 N -0.438 5.438 10 Si 0.814 3.186 11 H -0.186 1.186 12 H -0.192 1.192 13 H -0.172 1.172 14 C -0.228 4.228 15 C 0.036 3.964 16 F -0.131 7.131 17 H 0.088 0.912 18 H 0.092 0.908 19 H 0.085 0.915 20 H 0.171 0.829 21 H 0.107 0.893 22 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.047 0.487 1.421 1.503 hybrid contribution 1.081 -1.331 -0.052 1.715 sum 1.127 -0.844 1.369 1.964 Atomic orbital electron populations 1.20286 0.87563 1.02528 1.02309 1.20987 0.97854 0.86662 1.14367 1.66932 1.11061 1.27851 1.09954 1.22897 0.88683 0.97985 1.09721 1.18696 0.95585 0.91161 0.89692 1.20001 0.90612 1.03189 1.35445 0.88115 1.27033 1.06759 0.93416 0.91320 1.69836 1.41414 1.10533 1.21984 0.84990 0.74368 0.80251 0.78949 1.18649 1.19221 1.17198 1.21706 0.91188 1.00378 1.09552 1.18673 0.90856 0.81724 1.05177 1.91328 1.80172 1.47232 1.94395 0.91152 0.90817 0.91543 0.82910 0.89295 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.56 9.98 71.24 0.71 -1.84 14 2 C -0.06 -2.91 6.80 42.66 0.29 -2.62 14 3 N -0.45 -22.06 10.24 -181.53 -1.86 -23.92 14 4 C -0.03 -1.45 10.97 85.37 0.94 -0.51 14 5 C 0.05 2.82 5.60 -21.20 -0.12 2.70 14 6 C -0.46 -23.19 9.09 23.47 0.21 -22.98 14 7 H 0.10 4.63 7.90 -2.91 -0.02 4.61 14 8 C 0.03 1.51 5.18 85.26 0.44 1.95 14 9 N -0.81 -40.60 10.91 21.83 0.24 -40.36 14 10 Si 1.00 34.97 29.59 68.60 2.03 37.00 14 11 H -0.26 -9.03 7.11 99.48 0.71 -8.32 14 12 H -0.27 -9.01 7.11 99.48 0.71 -8.31 14 13 H -0.25 -8.31 7.11 99.48 0.71 -7.60 14 14 C -0.20 -10.85 8.80 22.96 0.20 -10.65 14 15 C 0.06 2.87 7.25 22.42 0.16 3.03 14 16 F -0.15 -7.13 16.46 44.97 0.74 -6.39 14 17 H 0.07 2.33 8.14 -2.39 -0.02 2.31 14 18 H 0.07 2.50 8.14 -2.39 -0.02 2.48 14 19 H 0.07 2.27 7.61 -2.39 -0.02 2.25 14 20 H 0.15 6.74 8.06 -2.91 -0.02 6.72 14 21 H 0.30 13.22 8.30 -92.71 -0.77 12.45 14 22 H 0.12 6.84 6.18 -2.91 -0.02 6.83 14 Total: -1.00 -56.39 206.53 5.22 -51.17 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.23 Total: 13.42 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 2.84 Total: -30.92 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -1.62 Total: -64.28 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.74 Total: -6.39 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Total: -56.39 5.22 -51.17 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238468666.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.983 kcal (2) G-P(sol) polarization free energy of solvation -56.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds