Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41381 * 126.57424 * 2 1 4 4 C 1.34520 * 106.83580 * 179.72986 * 3 2 1 5 5 O 1.34302 * 108.42210 * 0.26485 * 4 3 2 6 6 C 1.34302 * 109.47622 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.79016 * 180.02562 * 6 5 4 8 8 H 1.09005 * 109.47533 * 194.97670 * 7 6 5 9 9 N 1.46894 * 109.47383 * 314.97642 * 7 6 5 10 10 C 1.50699 * 109.47066 * 74.97833 * 7 6 5 11 11 H 1.08007 * 120.00020 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00464 * 179.97438 * 10 7 6 13 13 N 1.31522 * 119.99640 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00309 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.46802 * 60.00365 * 14 12 10 16 16 H 1.48502 * 109.46926 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47120 * 300.00345 * 14 12 10 18 18 H 1.09007 * 109.47162 * 90.02696 * 1 2 3 19 19 H 1.08995 * 109.47309 * 210.02375 * 1 2 3 20 20 H 1.09002 * 109.47648 * 330.02473 * 1 2 3 21 21 H 1.08002 * 126.58570 * 359.97438 * 3 2 1 22 22 H 1.08005 * 125.78720 * 180.29666 * 4 3 2 23 23 H 1.00899 * 110.99942 * 296.04566 * 9 7 6 24 24 H 1.00900 * 110.99971 * 59.99949 * 9 7 6 25 25 H 0.96995 * 119.99563 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6156 0.6811 0.0061 5 8 3.5848 -0.6616 0.0038 6 6 2.3087 -1.0801 -0.0031 7 6 1.8523 -2.5163 -0.0070 8 1 0.7974 -2.5617 -0.2779 9 7 2.6418 -3.2784 -0.9836 10 6 2.0442 -3.1081 1.3656 11 1 2.4559 -2.5047 2.1611 12 6 1.6942 -4.4199 1.6059 13 7 1.1933 -5.1549 0.6371 14 14 1.9327 -5.1536 3.3071 15 1 1.1354 -4.3829 4.2948 16 1 1.4829 -6.5689 3.3033 17 1 3.3700 -5.0925 3.6755 18 1 -0.3634 -0.0005 -1.0277 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3634 0.8902 0.5134 21 1 2.0366 2.1691 -0.0004 22 1 4.5060 1.2925 0.0123 23 1 2.4801 -2.9418 -1.9209 24 1 3.6240 -3.2517 -0.7542 25 1 0.9474 -6.0778 0.8061 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238481103.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = -14.723605 kcal Electronic energy + Delta-G solvation = -10779.761246 eV Core-core repulsion = 8758.789390 eV Total energy + Delta-G solvation = -2020.971856 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.32364 -36.58595 -34.78198 -33.52036 -30.68666 -28.51332 -27.40848 -24.12473 -21.98753 -20.43422 -18.62919 -17.76562 -16.71701 -16.56436 -16.11897 -15.31224 -14.58966 -14.22681 -13.91103 -13.66456 -13.28465 -13.16214 -12.79089 -12.71566 -12.38426 -11.95684 -11.38103 -10.59974 -10.40464 -9.27940 -8.92481 -8.03608 -6.26903 1.01806 1.42935 1.44264 1.52091 1.80484 2.37412 2.45984 3.20215 4.08534 4.15498 4.31088 4.37127 4.69900 4.83773 4.87412 5.03817 5.25475 5.34662 5.44738 5.68322 5.84675 6.03670 6.38382 6.58613 6.96023 7.14958 7.45143 8.99206 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.051520 B = 0.013056 C = 0.013023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.350014 B = 2144.054611 C = 2149.579411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.222 4.222 3 C -0.216 4.216 4 C -0.069 4.069 5 O -0.196 6.196 6 C -0.031 4.031 7 C 0.299 3.701 8 H 0.045 0.955 9 N -0.816 5.816 10 C -0.554 4.554 11 H 0.040 0.960 12 C 0.039 3.961 13 N -0.876 5.876 14 Si 0.953 3.047 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.275 1.275 18 H 0.069 0.931 19 H 0.047 0.953 20 H 0.080 0.920 21 H 0.171 0.829 22 H 0.236 0.764 23 H 0.314 0.686 24 H 0.325 0.675 25 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 9.661 -1.073 9.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.224 4.224 3 C -0.235 4.235 4 C -0.135 4.135 5 O -0.092 6.092 6 C -0.084 4.084 7 C 0.189 3.811 8 H 0.063 0.937 9 N -0.342 5.342 10 C -0.592 4.592 11 H 0.058 0.942 12 C -0.166 4.166 13 N -0.511 5.511 14 Si 0.778 3.222 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.201 1.201 18 H 0.088 0.912 19 H 0.067 0.933 20 H 0.099 0.901 21 H 0.188 0.812 22 H 0.253 0.747 23 H 0.125 0.875 24 H 0.136 0.864 25 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.386 8.627 -0.899 8.783 hybrid contribution 0.481 0.580 0.601 0.964 sum 1.867 9.207 -0.297 9.399 Atomic orbital electron populations 1.20101 0.88663 1.02275 1.01964 1.20672 0.98264 0.92574 1.10938 1.21969 0.92528 1.00029 1.08937 1.24741 1.01024 0.80506 1.07248 1.83986 1.29640 1.23893 1.71702 1.24600 0.80716 0.99825 1.03237 1.17624 0.93034 0.78082 0.92363 0.93708 1.58972 1.11273 1.60497 1.03447 1.21021 1.45907 0.97511 0.94807 0.94156 1.25657 0.93826 0.97107 0.99975 1.70192 1.40309 1.07851 1.32753 0.85733 0.78517 0.77536 0.80442 1.19705 1.20347 1.20070 0.91237 0.93347 0.90084 0.81172 0.74748 0.87505 0.86353 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.54 9.94 71.24 0.71 -1.84 15 2 C -0.22 -8.89 6.16 -19.94 -0.12 -9.01 15 3 C -0.22 -7.06 10.87 22.19 0.24 -6.82 15 4 C -0.07 -2.23 12.09 66.97 0.81 -1.42 15 5 O -0.20 -8.30 10.60 -2.47 -0.03 -8.33 15 6 C -0.03 -1.43 6.05 24.83 0.15 -1.28 15 7 C 0.30 15.60 2.91 43.42 0.13 15.72 15 8 H 0.05 2.52 7.14 -2.38 -0.02 2.50 15 9 N -0.82 -40.31 8.53 -174.96 -1.49 -41.81 15 10 C -0.55 -31.73 8.71 25.60 0.22 -31.50 15 11 H 0.04 2.36 7.74 -2.91 -0.02 2.33 15 12 C 0.04 2.19 5.39 84.65 0.46 2.65 15 13 N -0.88 -51.38 12.77 21.45 0.27 -51.10 15 14 Si 0.95 44.33 29.54 68.60 2.03 46.36 15 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 16 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 18 H 0.07 2.18 8.14 -2.38 -0.02 2.16 15 19 H 0.05 1.88 7.45 -2.39 -0.02 1.87 15 20 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 21 H 0.17 4.24 8.06 -2.91 -0.02 4.22 15 22 H 0.24 5.00 8.06 -2.91 -0.02 4.98 15 23 H 0.31 13.79 9.06 -89.69 -0.81 12.98 15 24 H 0.32 15.73 8.94 -89.69 -0.80 14.93 15 25 H 0.26 14.48 8.31 -92.71 -0.77 13.71 15 Total: -1.00 -64.71 225.92 2.97 -61.74 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.41 Total: 26.63 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 2.59 Total: -33.49 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -1.22 Total: -92.91 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.03 Total: -8.33 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -64.71 2.97 -61.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238481103.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.020 kcal (2) G-P(sol) polarization free energy of solvation -64.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds