Wall clock time and date at job start Mon Mar 30 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41045 * 126.67852 * 2 1 4 4 C 1.37375 * 103.80187 * 180.13256 * 3 2 1 5 5 C 1.47303 * 126.98354 * 179.87676 * 4 3 2 6 6 O 1.21872 * 120.00334 * 359.70830 * 5 4 3 7 7 C 1.41656 * 120.00293 * 179.71216 * 5 4 3 8 8 H 1.08009 * 119.99412 * 6.19715 * 7 5 4 9 9 C 1.40458 * 120.00372 * 186.19677 * 7 5 4 10 10 N 1.30476 * 119.99982 * 353.39722 * 9 7 5 11 11 Si 1.86799 * 119.99960 * 173.66871 * 9 7 5 12 12 H 1.48502 * 109.47201 * 94.98905 * 11 9 7 13 13 H 1.48498 * 109.47010 * 214.98860 * 11 9 7 14 14 H 1.48503 * 109.47296 * 334.98875 * 11 9 7 15 15 O 1.34648 * 106.02964 * 359.61582 * 4 3 2 16 16 N 1.20872 * 111.45154 * 0.25928 * 15 4 3 17 17 H 1.08998 * 109.47409 * 270.28309 * 1 2 3 18 18 H 1.09001 * 109.47304 * 30.28679 * 1 2 3 19 19 H 1.08997 * 109.47093 * 150.28326 * 1 2 3 20 20 H 1.07998 * 128.10067 * 0.02562 * 3 2 1 21 21 H 0.96999 * 120.00037 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1312 0.0000 4 6 3.6152 0.5971 -0.0031 5 6 4.8891 1.3368 -0.0070 6 8 4.8862 2.5555 -0.0131 7 6 6.1176 0.6316 -0.0037 8 1 6.1229 -0.4443 -0.0993 9 6 7.3288 1.3313 0.1240 10 7 7.3331 2.6360 0.1099 11 14 8.9343 0.3939 0.3062 12 1 9.5723 0.2411 -1.0261 13 1 9.8453 1.1432 1.2083 14 1 8.6616 -0.9478 0.8812 15 8 3.4547 -0.7397 0.0040 16 7 2.2851 -1.0445 0.0056 17 1 -0.3634 0.0051 1.0276 18 1 -0.3634 0.8874 -0.5183 19 1 -0.3633 -0.8925 -0.5094 20 1 2.0660 2.1733 0.0004 21 1 8.1695 3.1192 0.1984 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238485814.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:32 Heat of formation + Delta-G solvation = -13.864564 kcal Electronic energy + Delta-G solvation = -10294.132849 eV Core-core repulsion = 8137.365149 eV Total energy + Delta-G solvation = -2156.767700 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -45.63678 -38.92604 -35.69199 -34.95137 -32.64165 -29.59454 -29.12749 -24.82618 -23.44355 -21.09093 -18.98924 -18.46112 -18.05743 -16.85222 -15.78609 -15.26795 -14.52638 -14.39128 -14.09256 -13.99907 -13.59820 -13.38698 -12.78791 -12.67539 -12.18467 -11.99419 -11.08566 -10.94489 -10.37440 -10.03322 -8.56714 -7.29043 0.12546 1.19617 1.39872 1.42030 1.58709 2.16524 2.25481 2.26725 3.30651 3.36056 3.64237 4.16143 4.47243 4.54896 4.71641 4.88732 4.92170 5.07175 5.29639 5.81147 6.42013 6.50934 7.23930 7.92781 8.28306 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.086238 B = 0.011344 C = 0.010089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.603732 B = 2467.684197 C = 2774.760127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.018 3.982 3 C -0.227 4.227 4 C -0.057 4.057 5 C 0.391 3.609 6 O -0.570 6.570 7 C -0.519 4.519 8 H 0.094 0.906 9 C 0.025 3.975 10 N -0.768 5.768 11 Si 1.003 2.997 12 H -0.254 1.254 13 H -0.260 1.260 14 H -0.249 1.249 15 O 0.085 5.915 16 N -0.398 5.398 17 H 0.097 0.903 18 H 0.101 0.899 19 H 0.086 0.914 20 H 0.178 0.822 21 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -4.531 0.376 6.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.141 4.141 3 C -0.249 4.249 4 C -0.121 4.121 5 C 0.290 3.710 6 O -0.463 6.463 7 C -0.548 4.548 8 H 0.112 0.888 9 C -0.197 4.197 10 N -0.397 5.397 11 Si 0.820 3.180 12 H -0.178 1.178 13 H -0.185 1.185 14 H -0.172 1.172 15 O 0.023 5.977 16 N -0.109 5.109 17 H 0.115 0.885 18 H 0.120 0.880 19 H 0.105 0.895 20 H 0.195 0.805 21 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.878 -5.084 0.378 7.056 hybrid contribution 0.519 0.712 0.044 0.882 sum -4.359 -4.372 0.422 6.188 Atomic orbital electron populations 1.20343 0.82174 1.05097 1.04774 1.24235 1.00889 0.87740 1.01198 1.23107 0.90659 1.01838 1.09317 1.26718 1.00866 0.83041 1.01486 1.17644 0.84842 0.87575 0.80895 1.90554 1.87352 1.15108 1.53328 1.21491 0.91979 0.96719 1.44658 0.88771 1.27337 1.05370 0.95661 0.91299 1.70001 1.30857 1.10049 1.28746 0.84908 0.74118 0.79036 0.79892 1.17826 1.18454 1.17221 1.84871 1.21290 1.23450 1.68085 1.73628 0.89787 1.25741 1.21736 0.88500 0.88035 0.89529 0.80475 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.47 71.24 0.75 -0.82 14 2 C 0.02 0.66 7.31 43.48 0.32 0.98 14 3 C -0.23 -9.78 10.93 22.75 0.25 -9.53 14 4 C -0.06 -2.86 7.20 24.45 0.18 -2.69 14 5 C 0.39 22.96 6.91 25.50 0.18 23.14 14 6 O -0.57 -36.99 15.49 -4.90 -0.08 -37.07 14 7 C -0.52 -28.89 9.16 23.66 0.22 -28.68 14 8 H 0.09 4.85 7.80 -2.91 -0.02 4.83 14 9 C 0.02 1.29 5.50 85.44 0.47 1.76 14 10 N -0.77 -43.17 11.76 21.91 0.26 -42.92 14 11 Si 1.00 37.65 29.57 68.60 2.03 39.68 14 12 H -0.25 -8.99 7.11 99.48 0.71 -8.28 14 13 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 14 H -0.25 -8.95 7.11 99.48 0.71 -8.25 14 15 O 0.08 4.02 11.07 65.79 0.73 4.75 14 16 N -0.40 -16.87 12.04 -48.61 -0.59 -17.46 14 17 H 0.10 1.92 8.14 -2.39 -0.02 1.90 14 18 H 0.10 1.93 8.14 -2.39 -0.02 1.91 14 19 H 0.09 1.81 8.14 -2.39 -0.02 1.79 14 20 H 0.18 7.04 8.06 -2.91 -0.02 7.01 14 21 H 0.29 14.36 8.29 -92.71 -0.77 13.59 14 Total: -1.00 -68.74 207.30 5.95 -62.78 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.25 Total: 6.07 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 2.35 Total: -15.84 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -0.33 Total: -60.38 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: 0.65 Total: -32.32 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -68.74 5.95 -62.78 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238485814.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.919 kcal (2) G-P(sol) polarization free energy of solvation -68.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds