Wall clock time and date at job start Mon Mar 30 2020 02:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31955 * 119.52417 * 2 1 4 4 C 1.32049 * 122.35908 * 179.97438 * 3 2 1 5 5 C 1.37652 * 121.09856 * 0.02562 * 4 3 2 6 6 C 1.41053 * 118.89482 * 359.93933 * 5 4 3 7 7 C 1.41376 * 121.04601 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00377 * 203.29233 * 7 6 5 9 9 C 1.40054 * 120.00137 * 23.28608 * 7 6 5 10 10 N 1.30757 * 119.99809 * 17.15860 * 9 7 6 11 11 Si 1.86803 * 120.00406 * 197.15852 * 9 7 6 12 12 H 1.48500 * 109.46929 * 0.02562 * 11 9 7 13 13 H 1.48491 * 109.47007 * 119.99993 * 11 9 7 14 14 H 1.48502 * 109.46842 * 240.00330 * 11 9 7 15 15 C 1.38087 * 119.51793 * 179.97438 * 2 1 3 16 16 F 1.35095 * 120.60720 * 359.72986 * 15 2 1 17 17 H 1.08998 * 109.47015 * 270.02839 * 1 2 3 18 18 H 1.09000 * 109.46720 * 30.02564 * 1 2 3 19 19 H 1.08992 * 109.47067 * 150.02267 * 1 2 3 20 20 H 1.07999 * 119.45001 * 179.97438 * 4 3 2 21 21 H 1.07995 * 120.55011 * 179.97438 * 5 4 3 22 22 H 0.97004 * 119.99578 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1573 1.1482 0.0000 4 6 3.4762 1.2135 0.0005 5 6 4.2446 0.0714 0.0005 6 6 3.6005 -1.1834 0.0013 7 6 4.3451 -2.3852 0.0019 8 1 3.8993 -3.2970 -0.3674 9 6 5.6610 -2.3934 0.4812 10 7 6.0920 -1.4083 1.2252 11 14 6.8006 -3.8118 0.0578 12 1 6.0768 -4.7916 -0.7915 13 1 7.9811 -3.2949 -0.6799 14 1 7.2497 -4.4760 1.3078 15 6 2.1874 -1.2016 0.0005 16 9 1.5145 -2.3731 0.0065 17 1 -0.3633 0.0005 1.0277 18 1 -0.3633 0.8898 -0.5142 19 1 -0.3633 -0.8901 -0.5134 20 1 3.9600 2.1791 0.0001 21 1 5.3227 0.1352 0.0005 22 1 7.0033 -1.4142 1.5575 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238489307.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:47 Heat of formation + Delta-G solvation = -36.512778 kcal Electronic energy + Delta-G solvation = -10423.940681 eV Core-core repulsion = 8278.563670 eV Total energy + Delta-G solvation = -2145.377011 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.060 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -47.29604 -38.23629 -34.38519 -31.37365 -30.38788 -26.50710 -25.84100 -21.45892 -20.89104 -17.33542 -15.97043 -15.92693 -15.00572 -14.36767 -14.22042 -12.73934 -12.69426 -12.46267 -12.25102 -11.85639 -11.54873 -11.34605 -11.17316 -10.97824 -10.35583 -10.07624 -9.51842 -8.17213 -8.06286 -7.42839 -6.97756 -4.70223 2.53078 2.62450 2.96885 3.03470 3.10784 3.77542 4.47471 5.36843 5.50151 5.78169 6.00987 6.29858 6.31730 6.47298 6.70849 6.86873 6.94889 7.25240 7.32770 7.75837 7.89582 8.32937 8.53134 8.59610 9.44877 9.92217 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.061426 B = 0.014602 C = 0.012169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.721086 B = 1917.025197 C = 2300.282380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.103 3.897 3 N -0.556 5.556 4 C 0.080 3.920 5 C -0.204 4.204 6 C 0.103 3.897 7 C -0.444 4.444 8 H 0.087 0.913 9 C 0.077 3.923 10 N -0.779 5.779 11 Si 0.917 3.083 12 H -0.257 1.257 13 H -0.269 1.269 14 H -0.271 1.271 15 C -0.076 4.076 16 F -0.157 7.157 17 H 0.062 0.938 18 H 0.065 0.935 19 H 0.062 0.938 20 H 0.127 0.873 21 H 0.133 0.867 22 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -0.655 -1.342 1.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.034 4.034 3 N -0.272 5.272 4 C -0.071 4.071 5 C -0.226 4.226 6 C 0.095 3.905 7 C -0.474 4.474 8 H 0.105 0.895 9 C -0.144 4.144 10 N -0.403 5.403 11 Si 0.741 3.259 12 H -0.181 1.181 13 H -0.193 1.193 14 H -0.196 1.196 15 C -0.100 4.100 16 F -0.136 7.136 17 H 0.081 0.919 18 H 0.084 0.916 19 H 0.081 0.919 20 H 0.144 0.856 21 H 0.151 0.849 22 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.858 0.188 -1.204 1.490 hybrid contribution 1.102 -1.554 -0.018 1.905 sum 0.244 -1.366 -1.222 1.849 Atomic orbital electron populations 1.20466 0.90888 1.01852 1.01659 1.20614 0.95627 0.87945 0.99227 1.67229 1.10309 1.26910 1.22721 1.22034 0.89407 0.97487 0.98160 1.22094 1.01086 0.91274 1.08158 1.17902 0.89073 0.94755 0.88800 1.19612 0.96573 0.95824 1.35414 0.89482 1.26022 0.98608 0.97579 0.92156 1.69777 1.18027 1.30675 1.21841 0.86101 0.79531 0.80810 0.79486 1.18053 1.19345 1.19614 1.18623 0.90879 0.80810 1.19689 1.91251 1.80155 1.46902 1.95291 0.91878 0.91614 0.91904 0.85553 0.84949 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.99 36.01 0.36 -1.40 14 2 C 0.10 2.49 6.78 -82.59 -0.56 1.93 14 3 N -0.56 -13.69 10.24 -9.58 -0.10 -13.78 14 4 C 0.08 1.92 11.15 -17.67 -0.20 1.73 14 5 C -0.20 -5.25 8.80 -38.73 -0.34 -5.59 14 6 C 0.10 2.81 5.61 -106.47 -0.60 2.22 14 7 C -0.44 -11.84 8.87 -37.71 -0.33 -12.17 14 8 H 0.09 2.29 7.79 -52.49 -0.41 1.88 14 9 C 0.08 1.88 5.20 -17.33 -0.09 1.79 14 10 N -0.78 -19.35 10.91 55.55 0.61 -18.75 14 11 Si 0.92 18.06 29.59 -169.99 -5.03 13.03 14 12 H -0.26 -5.07 7.11 56.52 0.40 -4.66 14 13 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 14 H -0.27 -5.23 7.11 56.52 0.40 -4.82 14 15 C -0.08 -1.99 7.28 -38.47 -0.28 -2.27 14 16 F -0.16 -3.97 16.04 2.25 0.04 -3.94 14 17 H 0.06 1.12 8.14 -51.93 -0.42 0.70 14 18 H 0.06 1.15 8.14 -51.93 -0.42 0.73 14 19 H 0.06 1.13 7.63 -51.93 -0.40 0.74 14 20 H 0.13 2.61 8.06 -52.49 -0.42 2.18 14 21 H 0.13 3.39 6.17 -52.49 -0.32 3.07 14 22 H 0.29 6.33 8.29 -40.82 -0.34 5.99 14 LS Contribution 206.02 15.07 3.10 3.10 Total: -1.00 -28.06 206.02 -4.95 -33.01 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -1.53 Total: 1.08 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.04 Total: -13.76 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.51 Total: -32.53 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.94 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -28.06 -4.95 -33.01 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238489307.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.501 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds