Wall clock time and date at job start Mon Mar 30 2020 02:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 126.57505 * 2 1 4 4 O 1.34302 * 108.41876 * 180.02562 * 3 2 1 5 5 C 1.34302 * 109.47622 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.78822 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46771 * 200.02583 * 6 5 4 8 8 N 1.46903 * 109.47029 * 320.01851 * 6 5 4 9 9 C 1.50690 * 109.47490 * 80.02401 * 6 5 4 10 10 H 1.08004 * 120.00151 * 359.97438 * 9 6 5 11 11 C 1.37875 * 120.00465 * 179.97438 * 9 6 5 12 12 N 1.31518 * 119.99680 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 120.00670 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.47115 * 59.99662 * 13 11 9 15 15 H 1.48495 * 109.47537 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47132 * 300.00557 * 13 11 9 17 17 C 1.34513 * 108.42027 * 359.72026 * 5 4 3 18 18 H 1.08999 * 109.46995 * 90.02427 * 1 2 3 19 19 H 1.08994 * 109.46790 * 210.02114 * 1 2 3 20 20 H 1.08997 * 109.47305 * 330.02554 * 1 2 3 21 21 H 1.08004 * 125.79068 * 359.96505 * 3 2 1 22 22 H 1.00903 * 110.99332 * 60.00380 * 8 6 5 23 23 H 1.00894 * 110.99740 * 183.95940 * 8 6 5 24 24 H 0.97000 * 119.99965 * 180.02562 * 12 11 9 25 25 H 1.08006 * 126.57885 * 180.26647 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3086 1.0803 0.0000 4 8 3.5848 0.6618 -0.0006 5 6 3.6157 -0.6809 -0.0015 6 6 4.8582 -1.5338 -0.0029 7 1 4.6110 -2.5353 -0.3554 8 7 5.8619 -0.9354 -0.8931 9 6 5.4126 -1.6162 1.3959 10 1 4.9153 -1.1020 2.2050 11 6 6.5547 -2.3480 1.6429 12 7 7.1606 -2.9738 0.6575 13 14 7.2424 -2.4496 3.3766 14 1 6.2276 -3.0535 4.2771 15 1 8.4659 -3.2911 3.3754 16 1 7.5798 -1.0852 3.8560 17 6 2.3496 -1.1352 0.0047 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5141 20 1 -0.3634 0.8902 0.5134 21 1 1.9814 2.1095 -0.0005 22 1 6.1079 -0.0058 -0.5873 23 1 6.6800 -1.5219 -0.9617 24 1 7.9639 -3.4889 0.8312 25 1 2.0368 -2.1690 0.0097 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238549431.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:56 Heat of formation + Delta-G solvation = -1.648196 kcal Electronic energy + Delta-G solvation = -10610.984821 eV Core-core repulsion = 8590.579957 eV Total energy + Delta-G solvation = -2020.404864 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.67377 -34.77056 -33.36069 -31.44067 -29.13655 -26.60217 -25.78366 -22.48463 -20.37884 -18.61001 -16.66982 -16.30139 -15.02582 -14.85232 -14.08811 -13.41052 -12.88725 -12.75118 -12.69008 -11.84358 -11.77496 -11.34237 -11.16336 -10.93485 -10.73035 -10.09980 -9.98226 -8.81932 -8.71455 -7.60502 -7.22021 -6.15828 -4.33665 2.63853 3.22497 3.26908 3.29540 3.44218 3.97228 4.29997 5.06516 5.43752 5.54239 5.63137 5.91369 6.10071 6.17338 6.45919 6.66008 6.71988 7.02241 7.29272 7.38053 7.68271 7.92762 8.16847 8.56702 8.83302 9.05168 9.38238 10.81494 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.061834 B = 0.011519 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.719404 B = 2430.161250 C = 2596.574184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.182 4.182 3 C -0.084 4.084 4 O -0.170 6.170 5 C 0.072 3.928 6 C 0.279 3.721 7 H 0.068 0.932 8 N -0.850 5.850 9 C -0.551 4.551 10 H 0.058 0.942 11 C 0.068 3.932 12 N -0.893 5.893 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C -0.252 4.252 18 H 0.059 0.941 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.187 0.813 22 H 0.319 0.681 23 H 0.359 0.641 24 H 0.269 0.731 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 4.318 -0.312 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.183 4.183 3 C -0.151 4.151 4 O -0.066 6.066 5 C 0.020 3.980 6 C 0.168 3.832 7 H 0.086 0.914 8 N -0.380 5.380 9 C -0.590 4.590 10 H 0.076 0.924 11 C -0.135 4.135 12 N -0.532 5.532 13 Si 0.731 3.269 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.272 4.272 18 H 0.078 0.922 19 H 0.079 0.921 20 H 0.075 0.925 21 H 0.204 0.796 22 H 0.127 0.873 23 H 0.175 0.825 24 H 0.078 0.922 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.163 4.289 -0.941 8.402 hybrid contribution 0.752 -0.184 1.886 2.039 sum -6.411 4.104 0.945 7.671 Atomic orbital electron populations 1.20073 0.90334 1.01705 1.01224 1.20328 0.96349 0.93298 1.08370 1.23497 0.81372 0.98881 1.11382 1.84029 1.28278 1.23318 1.70945 1.23570 0.98071 0.79578 0.96762 1.17755 0.83201 0.90330 0.91875 0.91425 1.59441 1.18541 1.06719 1.53338 1.21750 1.10585 1.32240 0.94454 0.92389 1.25002 0.96399 0.94246 0.97850 1.69726 1.19763 1.32278 1.31448 0.86462 0.78290 0.78212 0.83957 1.20024 1.21024 1.20091 1.21249 0.92020 0.99100 1.14796 0.92180 0.92059 0.92453 0.79591 0.87253 0.82467 0.92151 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.40 36.01 0.37 -0.68 15 2 C -0.18 -3.37 6.16 -104.74 -0.65 -4.02 15 3 C -0.08 -1.56 12.01 29.42 0.35 -1.20 15 4 O -0.17 -3.83 10.53 5.71 0.06 -3.77 15 5 C 0.07 1.72 6.08 -35.62 -0.22 1.50 15 6 C 0.28 7.23 3.17 -70.02 -0.22 7.01 15 7 H 0.07 1.86 8.13 -51.93 -0.42 1.44 15 8 N -0.85 -21.14 9.18 -6.65 -0.06 -21.20 15 9 C -0.55 -15.21 8.71 -34.45 -0.30 -15.51 15 10 H 0.06 1.63 7.74 -52.48 -0.41 1.23 15 11 C 0.07 1.84 5.38 -17.82 -0.10 1.74 15 12 N -0.89 -24.50 11.54 55.43 0.64 -23.86 15 13 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 15 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 15 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 16 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 17 C -0.25 -5.42 10.76 -39.71 -0.43 -5.85 15 18 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 19 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.19 2.59 8.06 -52.48 -0.42 2.17 15 22 H 0.32 7.73 8.88 -39.29 -0.35 7.38 15 23 H 0.36 9.25 7.08 -39.29 -0.28 8.98 15 24 H 0.27 7.01 8.31 -40.82 -0.34 6.68 15 25 H 0.14 2.76 8.06 -52.48 -0.42 2.33 15 LS Contribution 225.46 15.07 3.40 3.40 Total: -1.00 -28.48 225.46 -4.87 -33.35 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -2.70 Total: 13.09 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -1.18 Total: -17.01 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.58 Total: -45.07 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: 0.06 Total: -3.77 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.48 -4.87 -33.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238549431.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.701 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds