Wall clock time and date at job start Mon Mar 30 2020 02:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 126.57505 * 2 1 4 4 O 1.34302 * 108.41876 * 180.02562 * 3 2 1 5 5 C 1.34302 * 109.47622 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.78822 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46771 * 200.02583 * 6 5 4 8 8 N 1.46903 * 109.47029 * 320.01851 * 6 5 4 9 9 C 1.50690 * 109.47490 * 80.02401 * 6 5 4 10 10 H 1.08004 * 120.00151 * 359.97438 * 9 6 5 11 11 C 1.37875 * 120.00465 * 179.97438 * 9 6 5 12 12 N 1.31518 * 119.99680 * 0.02562 * 11 9 6 13 13 Si 1.86795 * 120.00670 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.47115 * 59.99662 * 13 11 9 15 15 H 1.48495 * 109.47537 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47132 * 300.00557 * 13 11 9 17 17 C 1.34513 * 108.42027 * 359.72026 * 5 4 3 18 18 H 1.08999 * 109.46995 * 90.02427 * 1 2 3 19 19 H 1.08994 * 109.46790 * 210.02114 * 1 2 3 20 20 H 1.08997 * 109.47305 * 330.02554 * 1 2 3 21 21 H 1.08004 * 125.79068 * 359.96505 * 3 2 1 22 22 H 1.00903 * 110.99332 * 60.00380 * 8 6 5 23 23 H 1.00894 * 110.99740 * 183.95940 * 8 6 5 24 24 H 0.97000 * 119.99965 * 180.02562 * 12 11 9 25 25 H 1.08006 * 126.57885 * 180.26647 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3086 1.0803 0.0000 4 8 3.5848 0.6618 -0.0006 5 6 3.6157 -0.6809 -0.0015 6 6 4.8582 -1.5338 -0.0029 7 1 4.6110 -2.5353 -0.3554 8 7 5.8619 -0.9354 -0.8931 9 6 5.4126 -1.6162 1.3959 10 1 4.9153 -1.1020 2.2050 11 6 6.5547 -2.3480 1.6429 12 7 7.1606 -2.9738 0.6575 13 14 7.2424 -2.4496 3.3766 14 1 6.2276 -3.0535 4.2771 15 1 8.4659 -3.2911 3.3754 16 1 7.5798 -1.0852 3.8560 17 6 2.3496 -1.1352 0.0047 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3633 -0.8898 0.5141 20 1 -0.3634 0.8902 0.5134 21 1 1.9814 2.1095 -0.0005 22 1 6.1079 -0.0058 -0.5873 23 1 6.6800 -1.5219 -0.9617 24 1 7.9639 -3.4889 0.8312 25 1 2.0368 -2.1690 0.0097 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238549431.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:55 Heat of formation + Delta-G solvation = -21.290719 kcal Electronic energy + Delta-G solvation = -10611.836584 eV Core-core repulsion = 8590.579957 eV Total energy + Delta-G solvation = -2021.256628 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.28834 -36.77123 -34.82359 -33.47059 -30.79115 -28.17764 -27.57604 -24.37920 -22.03641 -20.21487 -18.71324 -17.96853 -16.79845 -16.62619 -16.04596 -15.07020 -14.76842 -14.04677 -13.85871 -13.52533 -13.42436 -13.23366 -12.87615 -12.83032 -12.33402 -12.08028 -11.86911 -10.81694 -10.33625 -9.43047 -9.05703 -8.20059 -6.48367 1.05483 1.38023 1.38241 1.47559 1.82508 2.32365 2.42409 2.97380 3.99312 4.16171 4.29318 4.51283 4.70108 4.90643 4.92287 5.11969 5.13821 5.39391 5.45395 5.55283 5.81931 5.94472 6.44322 6.52022 6.77317 6.99447 7.27687 8.74359 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.061834 B = 0.011519 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.719404 B = 2430.161250 C = 2596.574184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.188 4.188 3 C -0.078 4.078 4 O -0.190 6.190 5 C 0.029 3.971 6 C 0.281 3.719 7 H 0.040 0.960 8 N -0.842 5.842 9 C -0.573 4.573 10 H 0.045 0.955 11 C 0.027 3.973 12 N -0.912 5.912 13 Si 0.967 3.033 14 H -0.273 1.273 15 H -0.275 1.275 16 H -0.273 1.273 17 C -0.255 4.255 18 H 0.076 0.924 19 H 0.065 0.935 20 H 0.083 0.917 21 H 0.235 0.765 22 H 0.321 0.679 23 H 0.351 0.649 24 H 0.273 0.727 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 5.287 0.358 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.190 4.190 3 C -0.144 4.144 4 O -0.086 6.086 5 C -0.023 4.023 6 C 0.170 3.830 7 H 0.058 0.942 8 N -0.371 5.371 9 C -0.612 4.612 10 H 0.063 0.937 11 C -0.174 4.174 12 N -0.551 5.551 13 Si 0.792 3.208 14 H -0.198 1.198 15 H -0.200 1.200 16 H -0.198 1.198 17 C -0.275 4.275 18 H 0.094 0.906 19 H 0.084 0.916 20 H 0.102 0.898 21 H 0.251 0.749 22 H 0.130 0.870 23 H 0.167 0.833 24 H 0.082 0.918 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.265 5.259 -0.281 9.800 hybrid contribution 1.019 -0.454 1.634 1.978 sum -7.246 4.805 1.352 8.799 Atomic orbital electron populations 1.20181 0.86754 1.03287 1.02761 1.20821 0.98741 0.91795 1.07609 1.24511 0.79789 1.01069 1.09017 1.83979 1.30623 1.22514 1.71530 1.23181 0.97907 0.80484 1.00684 1.17471 0.84454 0.89913 0.91131 0.94231 1.59412 1.18005 1.06565 1.53121 1.21911 1.11366 1.32987 0.94969 0.93692 1.25753 0.96417 0.93614 1.01650 1.69811 1.19933 1.32242 1.33094 0.85473 0.77772 0.78296 0.79286 1.19804 1.19958 1.19780 1.21574 0.92092 1.00437 1.13381 0.90554 0.91629 0.89799 0.74901 0.86984 0.83331 0.91780 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.75 10.40 71.24 0.74 -1.01 15 2 C -0.19 -6.54 6.16 -19.94 -0.12 -6.66 15 3 C -0.08 -2.67 12.01 66.97 0.80 -1.87 15 4 O -0.19 -8.46 10.53 -2.47 -0.03 -8.48 15 5 C 0.03 1.39 6.08 24.83 0.15 1.54 15 6 C 0.28 15.04 3.17 43.42 0.14 15.18 15 7 H 0.04 2.29 8.13 -2.39 -0.02 2.27 15 8 N -0.84 -42.94 9.18 -174.95 -1.61 -44.54 15 9 C -0.57 -32.33 8.71 25.60 0.22 -32.11 15 10 H 0.04 2.59 7.74 -2.91 -0.02 2.56 15 11 C 0.03 1.46 5.38 84.65 0.46 1.92 15 12 N -0.91 -50.49 11.54 21.45 0.25 -50.24 15 13 Si 0.97 43.06 29.54 68.60 2.03 45.09 15 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 15 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 17 C -0.26 -10.92 10.76 22.19 0.24 -10.68 15 18 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 19 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.23 5.45 8.06 -2.91 -0.02 5.43 15 22 H 0.32 15.90 8.88 -89.69 -0.80 15.11 15 23 H 0.35 18.60 7.08 -89.70 -0.63 17.96 15 24 H 0.27 14.22 8.31 -92.71 -0.77 13.45 15 25 H 0.14 5.70 8.06 -2.91 -0.02 5.68 15 Total: -1.00 -61.32 225.46 3.04 -58.28 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.23 Total: 33.60 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 2.63 Total: -33.70 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -1.36 Total: -94.78 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.03 Total: -8.48 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -61.32 3.04 -58.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238549431.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.987 kcal (2) G-P(sol) polarization free energy of solvation -61.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds