Wall clock time and date at job start Mon Mar 30 2020 02:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34508 * 126.58094 * 2 1 4 4 O 1.34302 * 108.42392 * 179.89999 * 3 2 1 5 5 C 1.34301 * 109.47417 * 0.37686 * 4 3 2 6 6 C 1.50699 * 125.79140 * 179.78816 * 5 4 3 7 7 H 1.09001 * 109.47278 * 159.98335 * 6 5 4 8 8 N 1.46900 * 109.46873 * 39.97863 * 6 5 4 9 9 C 1.50697 * 109.47166 * 279.97725 * 6 5 4 10 10 H 1.08007 * 120.00130 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99951 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00110 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00269 * 180.02562 * 11 9 6 14 14 H 1.48505 * 109.46670 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47370 * 120.00202 * 13 11 9 16 16 H 1.48501 * 109.47400 * 240.00754 * 13 11 9 17 17 C 1.34522 * 108.42243 * 359.77546 * 5 4 3 18 18 H 1.09001 * 109.46953 * 269.68019 * 1 2 3 19 19 H 1.09000 * 109.47318 * 29.67616 * 1 2 3 20 20 H 1.09000 * 109.47161 * 149.68247 * 1 2 3 21 21 H 1.08007 * 125.78629 * 0.04497 * 3 2 1 22 22 H 1.00903 * 110.99426 * 176.04490 * 8 6 5 23 23 H 1.00896 * 111.00344 * 300.00040 * 8 6 5 24 24 H 0.97003 * 119.99961 * 179.97438 * 12 11 9 25 25 H 1.07997 * 126.58097 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3087 1.0801 0.0000 4 8 3.5848 0.6616 0.0022 5 6 3.6157 -0.6810 -0.0047 6 6 4.8581 -1.5340 -0.0093 7 1 4.6112 -2.5375 0.3373 8 7 5.8626 -0.9408 0.8833 9 6 5.4112 -1.6082 -1.4092 10 1 4.9131 -1.0893 -2.2149 11 6 6.5536 -2.3378 -1.6612 12 7 7.1604 -2.9694 -0.6801 13 14 7.2397 -2.4293 -3.3963 14 1 6.3791 -1.6371 -4.3112 15 1 8.6184 -1.8780 -3.4131 16 1 7.2671 -3.8450 -3.8438 17 6 2.3495 -1.1354 -0.0064 18 1 -0.3633 -0.0057 1.0277 19 1 -0.3634 0.8929 -0.5088 20 1 -0.3633 -0.8871 -0.5188 21 1 1.9815 2.1094 0.0007 22 1 6.6808 -1.5278 0.9477 23 1 6.1085 -0.0095 0.5829 24 1 7.9639 -3.4829 -0.8575 25 1 2.0367 -2.1690 -0.0112 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238549564.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:58 Heat of formation + Delta-G solvation = -21.418960 kcal Electronic energy + Delta-G solvation = -10612.058524 eV Core-core repulsion = 8590.796335 eV Total energy + Delta-G solvation = -2021.262188 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.28782 -36.77404 -34.82345 -33.47290 -30.79029 -28.18039 -27.57840 -24.38140 -22.03734 -20.21589 -18.71919 -17.96990 -16.79820 -16.62563 -16.04660 -15.07119 -14.78124 -14.04660 -13.85857 -13.52679 -13.42266 -13.22758 -12.89530 -12.83430 -12.34472 -12.04284 -11.87735 -10.82369 -10.33595 -9.42910 -9.05808 -8.20478 -6.48633 1.05500 1.35384 1.37949 1.49902 1.82506 2.32248 2.42311 2.96946 3.99289 4.16162 4.29310 4.51250 4.70113 4.90599 4.92223 5.11906 5.13784 5.39355 5.45380 5.55529 5.81823 5.94381 6.44295 6.52127 6.77373 6.99406 7.27587 8.74264 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.061820 B = 0.011519 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.815659 B = 2430.137600 C = 2596.418054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.188 4.188 3 C -0.078 4.078 4 O -0.190 6.190 5 C 0.029 3.971 6 C 0.280 3.720 7 H 0.040 0.960 8 N -0.842 5.842 9 C -0.571 4.571 10 H 0.044 0.956 11 C 0.026 3.974 12 N -0.912 5.912 13 Si 0.968 3.032 14 H -0.275 1.275 15 H -0.273 1.273 16 H -0.273 1.273 17 C -0.255 4.255 18 H 0.076 0.924 19 H 0.083 0.917 20 H 0.065 0.935 21 H 0.235 0.765 22 H 0.351 0.649 23 H 0.321 0.679 24 H 0.273 0.727 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 5.277 -0.313 9.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.190 4.190 3 C -0.144 4.144 4 O -0.086 6.086 5 C -0.023 4.023 6 C 0.170 3.830 7 H 0.058 0.942 8 N -0.371 5.371 9 C -0.610 4.610 10 H 0.063 0.937 11 C -0.175 4.175 12 N -0.551 5.551 13 Si 0.793 3.207 14 H -0.200 1.200 15 H -0.198 1.198 16 H -0.199 1.199 17 C -0.275 4.275 18 H 0.094 0.906 19 H 0.102 0.898 20 H 0.084 0.916 21 H 0.251 0.749 22 H 0.167 0.833 23 H 0.130 0.870 24 H 0.082 0.918 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.263 5.250 0.324 9.795 hybrid contribution 1.029 -0.452 -1.628 1.978 sum -7.235 4.798 -1.304 8.779 Atomic orbital electron populations 1.20182 0.86750 1.03290 1.02759 1.20823 0.98744 0.91798 1.07605 1.24511 0.79793 1.01073 1.09022 1.83979 1.30620 1.22513 1.71530 1.23182 0.97916 0.80491 1.00676 1.17480 0.84457 0.89960 0.91126 0.94208 1.59409 1.17958 1.06537 1.53197 1.21962 1.11263 1.32749 0.95033 0.93734 1.25754 0.96432 0.93627 1.01659 1.69823 1.19924 1.32256 1.33124 0.85362 0.78106 0.78115 0.79161 1.19973 1.19838 1.19878 1.21579 0.92087 1.00443 1.13381 0.90553 0.89802 0.91623 0.74902 0.83327 0.86976 0.91794 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.76 10.40 71.24 0.74 -1.01 15 2 C -0.19 -6.54 6.16 -19.94 -0.12 -6.67 15 3 C -0.08 -2.68 12.01 66.97 0.80 -1.88 15 4 O -0.19 -8.46 10.53 -2.46 -0.03 -8.48 15 5 C 0.03 1.38 6.08 24.83 0.15 1.53 15 6 C 0.28 15.01 3.17 43.42 0.14 15.15 15 7 H 0.04 2.31 8.13 -2.39 -0.02 2.29 15 8 N -0.84 -42.92 9.18 -174.96 -1.61 -44.52 15 9 C -0.57 -32.21 8.71 25.60 0.22 -31.99 15 10 H 0.04 2.58 7.74 -2.91 -0.02 2.56 15 11 C 0.03 1.43 5.38 84.65 0.46 1.89 15 12 N -0.91 -50.46 11.54 21.45 0.25 -50.21 15 13 Si 0.97 43.12 29.54 68.60 2.03 45.14 15 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 16 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 17 C -0.26 -10.92 10.76 22.19 0.24 -10.68 15 18 H 0.08 1.61 8.14 -2.39 -0.02 1.59 15 19 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 20 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.23 5.46 8.06 -2.91 -0.02 5.43 15 22 H 0.35 18.60 7.08 -89.69 -0.63 17.96 15 23 H 0.32 15.89 8.88 -89.70 -0.80 15.10 15 24 H 0.27 14.12 8.31 -92.71 -0.77 13.35 15 25 H 0.14 5.70 8.06 -2.91 -0.02 5.68 15 Total: -1.00 -61.44 225.46 3.04 -58.40 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.23 Total: 33.34 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 2.63 Total: -33.66 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -1.36 Total: -94.74 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.03 Total: -8.48 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -61.44 3.04 -58.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238549564.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.980 kcal (2) G-P(sol) polarization free energy of solvation -61.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds