Wall clock time and date at job start Mon Mar 30 2020 02:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34512 * 126.57650 * 2 1 4 4 O 1.34308 * 108.41619 * 180.02562 * 3 2 1 5 5 C 1.34305 * 109.47540 * 359.77228 * 4 3 2 6 6 C 1.34512 * 108.42094 * 0.37277 * 5 4 3 7 7 C 1.50701 * 126.57822 * 179.89672 * 6 5 4 8 8 H 1.09002 * 109.47060 * 144.69087 * 7 6 5 9 9 N 1.46901 * 109.46921 * 24.68906 * 7 6 5 10 10 C 1.50699 * 109.47269 * 264.68941 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47319 * 60.00570 * 14 12 10 16 16 H 1.48503 * 109.46734 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47266 * 300.00384 * 14 12 10 18 18 H 1.09005 * 109.47188 * 269.95860 * 1 2 3 19 19 H 1.08997 * 109.47362 * 29.95400 * 1 2 3 20 20 H 1.08998 * 109.47235 * 149.95761 * 1 2 3 21 21 H 1.07992 * 125.79316 * 0.02562 * 3 2 1 22 22 H 1.08001 * 125.78740 * 180.24050 * 5 4 3 23 23 H 1.00901 * 110.99547 * 176.04411 * 9 7 6 24 24 H 1.00898 * 111.00245 * 299.99784 * 9 7 6 25 25 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5848 0.6616 -0.0006 5 6 3.6156 -0.6811 0.0041 6 6 2.3495 -1.1353 -0.0006 7 6 1.9129 -2.5777 -0.0001 8 1 1.0024 -2.6815 0.5902 9 7 2.9730 -3.4100 0.5844 10 6 1.6476 -3.0228 -1.4152 11 1 1.7821 -2.3305 -2.2332 12 6 1.2341 -4.3140 -1.6657 13 7 1.0708 -5.1571 -0.6696 14 14 0.9059 -4.8659 -3.4199 15 1 2.1464 -4.7243 -4.2237 16 1 0.4755 -6.2872 -3.4192 17 1 -0.1658 -4.0249 -4.0111 18 1 -0.3634 -0.0007 1.0277 19 1 -0.3634 0.8904 -0.5131 20 1 -0.3633 -0.8896 -0.5145 21 1 1.9815 2.1094 0.0004 22 1 4.5059 -1.2924 0.0085 23 1 2.6791 -4.3726 0.6553 24 1 3.8281 -3.3310 0.0547 25 1 0.7795 -6.0654 -0.8458 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238551144.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:51 Heat of formation + Delta-G solvation = 0.810160 kcal Electronic energy + Delta-G solvation = -10767.994161 eV Core-core repulsion = 8747.695900 eV Total energy + Delta-G solvation = -2020.298262 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.69166 -35.19220 -32.89584 -31.26002 -28.62196 -26.39735 -25.98573 -22.68779 -19.73084 -18.88498 -16.53849 -16.28020 -15.09751 -14.65649 -13.90118 -13.69658 -12.96225 -12.66565 -12.45391 -11.96215 -11.58251 -11.21218 -10.97321 -10.77448 -10.54149 -10.09510 -9.69842 -8.71717 -8.35703 -7.61136 -7.18301 -6.06663 -4.22692 2.56872 3.24483 3.29496 3.31857 3.57942 3.94282 4.35703 5.14450 5.54273 5.71657 5.82116 6.23710 6.25850 6.45501 6.64067 6.71035 6.95440 7.07053 7.37256 7.72791 7.76776 7.99767 8.16404 8.71289 8.96023 9.12933 9.48746 10.90897 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.050807 B = 0.013477 C = 0.012600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.976957 B = 2077.083027 C = 2221.616798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.171 4.171 3 C -0.075 4.075 4 O -0.192 6.192 5 C -0.064 4.064 6 C -0.119 4.119 7 C 0.268 3.732 8 H 0.046 0.954 9 N -0.851 5.851 10 C -0.539 4.539 11 H 0.054 0.946 12 C 0.065 3.935 13 N -0.896 5.896 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 H 0.058 0.942 19 H 0.052 0.948 20 H 0.076 0.924 21 H 0.189 0.811 22 H 0.194 0.806 23 H 0.356 0.644 24 H 0.309 0.691 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 6.958 0.310 7.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.173 4.173 3 C -0.143 4.143 4 O -0.089 6.089 5 C -0.130 4.130 6 C -0.121 4.121 7 C 0.158 3.842 8 H 0.064 0.936 9 N -0.381 5.381 10 C -0.579 4.579 11 H 0.072 0.928 12 C -0.138 4.138 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 H 0.077 0.923 19 H 0.071 0.929 20 H 0.095 0.905 21 H 0.206 0.794 22 H 0.210 0.790 23 H 0.172 0.828 24 H 0.117 0.883 25 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.096 7.393 1.018 7.543 hybrid contribution -0.411 -0.992 -1.984 2.256 sum 0.685 6.401 -0.966 6.510 Atomic orbital electron populations 1.20119 0.90056 1.02372 1.01239 1.20392 0.96993 0.92717 1.07192 1.23508 0.81094 0.98895 1.10764 1.83938 1.28784 1.23321 1.72866 1.23581 0.99799 0.79562 1.10091 1.20921 0.91912 0.97800 1.01433 1.17379 0.91054 0.82610 0.93139 0.93606 1.59488 1.06215 1.16566 1.55785 1.21804 1.45983 0.96579 0.93535 0.92793 1.25028 0.94683 0.96674 0.97368 1.69733 1.47222 1.05849 1.30699 0.86585 0.78778 0.77508 0.84717 1.20277 1.21188 1.20196 0.92347 0.92889 0.90473 0.79434 0.78960 0.82792 0.88265 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.25 36.01 0.37 -1.07 15 2 C -0.17 -3.48 6.16 -104.74 -0.65 -4.13 15 3 C -0.08 -1.35 12.01 29.42 0.35 -0.99 15 4 O -0.19 -3.71 10.65 5.69 0.06 -3.65 15 5 C -0.06 -1.32 11.35 29.42 0.33 -0.99 15 6 C -0.12 -2.72 5.22 -104.75 -0.55 -3.27 15 7 C 0.27 6.87 3.01 -70.02 -0.21 6.66 15 8 H 0.05 1.29 8.14 -51.93 -0.42 0.87 15 9 N -0.85 -20.63 8.95 -6.65 -0.06 -20.69 15 10 C -0.54 -14.75 8.71 -34.44 -0.30 -15.05 15 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 12 C 0.06 1.75 5.38 -17.82 -0.10 1.66 15 13 N -0.90 -24.84 11.54 55.43 0.64 -24.20 15 14 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 18 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.08 1.54 8.09 -51.93 -0.42 1.12 15 21 H 0.19 2.50 8.06 -52.49 -0.42 2.07 15 22 H 0.19 3.54 7.37 -52.49 -0.39 3.15 15 23 H 0.36 9.18 7.08 -39.29 -0.28 8.90 15 24 H 0.31 7.02 8.00 -39.29 -0.31 6.71 15 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 LS Contribution 223.17 15.07 3.36 3.36 Total: -1.00 -28.80 223.17 -4.39 -33.20 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -2.63 Total: 13.05 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -0.74 Total: -17.18 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.58 Total: -44.89 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: 0.06 Total: -3.65 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -28.80 -4.39 -33.20 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551144.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.006 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds