Wall clock time and date at job start Mon Mar 30 2020 02:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48495 * 109.47010 * 269.99414 * 3 2 1 5 5 H 1.48493 * 109.47227 * 29.99898 * 3 2 1 6 6 H 1.48504 * 109.46894 * 150.00065 * 3 2 1 7 7 C 1.37877 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00188 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99707 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47051 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47051 * 179.97438 * 10 9 7 12 12 C 1.33088 * 126.58207 * 94.95931 * 11 10 9 13 13 C 1.46642 * 109.82444 * 179.97438 * 12 11 10 14 14 O 1.21609 * 124.99850 * 180.02562 * 13 12 11 15 15 N 1.34626 * 110.00634 * 0.03823 * 13 12 11 16 16 C 1.46879 * 107.34393 * 0.02562 * 15 13 12 17 17 H 0.97000 * 120.00254 * 0.02562 * 1 2 3 18 18 H 1.08998 * 109.47293 * 59.99734 * 9 7 2 19 19 H 1.09001 * 109.47128 * 299.99688 * 9 7 2 20 20 H 1.08997 * 109.47346 * 60.00329 * 10 9 7 21 21 H 1.08995 * 109.47296 * 299.99546 * 10 9 7 22 22 H 1.08000 * 125.07162 * 359.97438 * 12 11 10 23 23 H 0.97006 * 126.32933 * 180.02562 * 15 13 12 24 24 H 1.09002 * 110.17803 * 119.09171 * 16 15 13 25 25 H 1.08996 * 110.18033 * 240.83415 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9671 0.0012 12 6 1.1749 -5.7005 -1.0632 13 6 0.4419 -6.8985 -0.6413 14 8 0.0210 -7.7587 -1.3909 15 7 0.3032 -6.9058 0.6977 16 6 0.9508 -5.6918 1.2117 17 1 -0.4850 0.8400 -0.0004 18 1 0.6247 -2.5571 -0.8896 19 1 0.6241 -2.5567 0.8903 20 1 2.8719 -3.6043 0.8905 21 1 2.8719 -3.6043 -0.8894 22 1 1.4209 -5.4505 -2.0847 23 1 -0.1422 -7.5870 1.2256 24 1 0.2225 -5.0678 1.7298 25 1 1.7653 -5.9568 1.8858 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238639987.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:30 Heat of formation + Delta-G solvation = -25.942112 kcal Electronic energy + Delta-G solvation = -10226.144176 eV Core-core repulsion = 8204.685849 eV Total energy + Delta-G solvation = -2021.458327 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.28023 -36.48988 -34.03676 -32.19513 -29.63208 -26.88031 -25.17291 -21.77280 -20.37835 -18.91832 -17.08770 -16.31018 -15.37296 -14.70989 -14.52820 -14.01952 -13.17673 -13.01747 -12.80324 -12.26585 -11.68764 -11.29414 -10.97242 -10.73241 -10.08126 -9.96309 -9.63756 -9.25161 -9.08614 -8.67878 -8.44305 -6.09156 -4.13178 1.60175 3.27384 3.34204 3.36456 3.44219 3.55715 4.38268 4.61112 4.79426 5.27148 5.39350 5.53791 5.82256 6.01503 6.37636 6.47467 6.58275 6.81521 7.02370 7.15721 7.53196 7.63941 7.88356 8.27240 8.46866 8.93288 9.51932 11.01861 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.093896 B = 0.007940 C = 0.007901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.131805 B = 3525.405779 C = 3542.799848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.069 4.069 11 C -0.046 4.046 12 C -0.244 4.244 13 C 0.541 3.459 14 O -0.551 6.551 15 N -0.735 5.735 16 C 0.111 3.889 17 H 0.262 0.738 18 H 0.021 0.979 19 H 0.019 0.981 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.151 0.849 23 H 0.417 0.583 24 H 0.102 0.898 25 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -7.587 3.680 8.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.107 4.107 11 C -0.048 4.048 12 C -0.265 4.265 13 C 0.332 3.668 14 O -0.431 6.431 15 N -0.392 5.392 16 C -0.013 4.013 17 H 0.072 0.928 18 H 0.039 0.961 19 H 0.038 0.962 20 H 0.089 0.911 21 H 0.091 0.909 22 H 0.169 0.831 23 H 0.257 0.743 24 H 0.120 0.880 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.677 -7.876 3.253 8.932 hybrid contribution 0.151 0.724 0.281 0.791 sum 2.829 -7.152 3.534 8.464 Atomic orbital electron populations 1.69956 1.06113 1.26854 1.50278 1.25017 0.94846 0.99359 0.95080 0.86562 0.79798 0.83269 0.78196 1.20592 1.21207 1.19794 1.21192 0.93121 0.90710 1.51385 0.92372 1.19099 0.93627 0.90256 0.97889 1.20672 0.98371 0.89217 1.02408 1.23593 0.92384 0.94998 0.93831 1.23054 1.06090 0.96716 1.00672 1.19090 0.79044 0.86536 0.82086 1.90760 1.52409 1.42699 1.57236 1.46099 1.59267 1.25255 1.08569 1.21089 0.98105 0.85775 0.96326 0.92830 0.96056 0.96223 0.91122 0.90899 0.83119 0.74254 0.87971 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.18 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 15 7 C -0.53 -13.96 9.11 -34.44 -0.31 -14.28 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.03 0.67 4.95 -27.88 -0.14 0.54 15 10 C -0.07 -1.25 5.70 -27.88 -0.16 -1.41 15 11 C -0.05 -0.73 5.69 -100.94 -0.57 -1.30 15 12 C -0.24 -4.12 10.75 -37.98 -0.41 -4.53 15 13 C 0.54 9.48 8.33 -12.94 -0.11 9.38 15 14 O -0.55 -11.50 18.05 5.27 0.10 -11.40 15 15 N -0.74 -10.00 6.52 -62.40 -0.41 -10.41 15 16 C 0.11 1.43 7.78 -4.79 -0.04 1.40 15 17 H 0.26 7.19 8.31 -40.82 -0.34 6.86 15 18 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 19 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 20 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 21 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 22 H 0.15 2.44 8.06 -52.49 -0.42 2.02 15 23 H 0.42 4.52 8.96 -40.82 -0.37 4.16 15 24 H 0.10 1.28 8.14 -51.93 -0.42 0.85 15 25 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 228.40 15.07 3.44 3.44 Total: -1.00 -31.36 228.40 -5.86 -37.22 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -2.87 Total: -0.73 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.84 Total: -8.69 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.33 Total: -35.59 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.10 Total: -11.40 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.36 -5.86 -37.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238639987.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.273 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds