Wall clock time and date at job start Mon Mar 30 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08999 * 110.79657 * 303.33962 * 9 7 2 11 11 C 1.55045 * 110.90348 * 179.71902 * 9 7 2 12 12 C 1.54313 * 103.94416 * 201.72962 * 11 9 7 13 13 H 1.08999 * 111.54259 * 146.72736 * 12 11 9 14 14 C 1.54320 * 108.78810 * 270.93626 * 12 11 9 15 15 C 1.55055 * 103.94160 * 138.90189 * 14 12 11 16 16 C 1.55060 * 102.10854 * 319.93855 * 15 14 12 17 17 C 1.54315 * 103.94146 * 40.06487 * 16 15 14 18 18 H 1.08998 * 111.53700 * 96.88108 * 17 16 15 19 19 C 1.54314 * 108.78489 * 221.08942 * 17 16 15 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.08996 * 110.53654 * 320.34907 * 11 9 7 22 22 H 1.09006 * 110.53165 * 83.11691 * 11 9 7 23 23 H 1.08994 * 110.53431 * 257.51766 * 14 12 11 24 24 H 1.09004 * 110.53332 * 20.29297 * 14 12 11 25 25 H 1.08994 * 110.90603 * 201.73261 * 15 14 12 26 26 H 1.09007 * 110.93071 * 78.14954 * 15 14 12 27 27 H 1.08999 * 110.52977 * 281.44657 * 16 15 14 28 28 H 1.09001 * 110.53356 * 158.67994 * 16 15 14 29 29 H 1.09002 * 110.53319 * 330.44699 * 19 17 16 30 30 H 1.09002 * 110.53616 * 207.67565 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5688 -2.5560 0.8429 11 6 2.2286 -3.7025 -0.0107 12 6 1.3834 -4.8659 -0.5704 13 1 1.9900 -5.5547 -1.1584 14 6 0.6726 -5.5731 0.6026 15 6 -0.7505 -5.8610 0.0583 16 6 -1.0663 -4.5630 -0.7290 17 6 0.2665 -4.2172 -1.4258 18 1 0.2865 -4.5797 -2.4535 19 6 0.4899 -2.6926 -1.3423 20 1 -0.4850 0.8401 -0.0004 21 1 3.0797 -3.5008 -0.6611 22 1 2.5646 -3.9266 1.0018 23 1 1.1817 -6.5038 0.8530 24 1 0.6239 -4.9170 1.4717 25 1 -1.4581 -6.0024 0.8751 26 1 -0.7462 -6.7265 -0.6044 27 1 -1.3600 -3.7646 -0.0476 28 1 -1.8478 -4.7440 -1.4669 29 1 -0.4648 -2.1670 -1.3183 30 1 1.0959 -2.3485 -2.1805 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251098490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:17 Heat of formation + Delta-G solvation = -34.228583 kcal Electronic energy + Delta-G solvation = -11160.491444 eV Core-core repulsion = 9339.932794 eV Total energy + Delta-G solvation = -1820.558650 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.79744 -33.59790 -31.41956 -29.50866 -27.09450 -24.26617 -23.66830 -20.34588 -18.97325 -17.91877 -16.44329 -15.01406 -14.35773 -13.91656 -13.43012 -12.92328 -12.87677 -11.83799 -11.44055 -10.96480 -10.82838 -10.53359 -10.41384 -10.33329 -10.01279 -9.87427 -9.68188 -9.60743 -9.41226 -8.91825 -8.64009 -8.28984 -5.94295 -3.95929 3.32996 3.40997 3.45172 4.49616 5.18029 5.27235 5.39430 5.40846 5.96250 6.03421 6.12478 6.16292 6.22376 6.28880 6.38321 6.47343 6.64562 6.70040 6.87465 6.91488 6.99261 7.12380 7.17910 7.37913 7.50018 7.79243 7.98745 8.12808 8.55756 9.07502 9.67542 11.15512 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.073072 B = 0.012240 C = 0.011435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.089395 B = 2287.067740 C = 2447.995703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.053 3.947 10 H 0.032 0.968 11 C -0.115 4.115 12 C -0.095 4.095 13 H 0.058 0.942 14 C -0.116 4.116 15 C -0.126 4.126 16 C -0.116 4.116 17 C -0.100 4.100 18 H 0.055 0.945 19 C -0.098 4.098 20 H 0.258 0.742 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.411 -8.148 -0.841 8.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.050 0.950 11 C -0.152 4.152 12 C -0.114 4.114 13 H 0.076 0.924 14 C -0.153 4.153 15 C -0.163 4.163 16 C -0.154 4.154 17 C -0.118 4.118 18 H 0.074 0.926 19 C -0.137 4.137 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.560 -8.020 -0.838 8.084 hybrid contribution 0.425 0.956 -0.083 1.050 sum -0.135 -7.064 -0.921 7.125 Atomic orbital electron populations 1.69974 1.05841 1.26143 1.50977 1.24982 0.94815 0.98912 0.95260 0.86626 0.80230 0.84194 0.77477 1.19845 1.21139 1.21135 1.21222 0.92825 0.90747 1.50155 0.92774 1.19601 0.92466 0.91072 0.93381 0.94973 1.22588 0.98384 0.95954 0.98310 1.22461 0.96557 0.96826 0.95518 0.92389 1.22482 0.95136 0.99135 0.98556 1.22563 0.96963 0.97778 0.99006 1.22504 0.97060 0.97026 0.98762 1.22564 0.93631 0.98767 0.96849 0.92650 1.22442 1.01085 0.90248 0.99885 0.93264 0.93211 0.93684 0.93088 0.91294 0.92544 0.92483 0.90837 0.93124 0.91628 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 12.42 55.43 0.69 -25.34 16 2 C 0.06 1.74 5.37 -17.82 -0.10 1.64 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.37 8.54 -34.44 -0.29 -14.67 16 8 H 0.05 1.51 7.78 -52.49 -0.41 1.10 16 9 C 0.05 1.35 2.63 -89.61 -0.24 1.11 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 11 C -0.11 -2.47 5.51 -24.96 -0.14 -2.60 16 12 C -0.10 -1.77 3.78 -88.23 -0.33 -2.10 16 13 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.12 -1.93 6.18 -24.95 -0.15 -2.08 16 15 C -0.13 -1.95 6.92 -24.56 -0.17 -2.12 16 16 C -0.12 -2.08 6.18 -24.95 -0.15 -2.23 16 17 C -0.10 -1.94 3.78 -88.23 -0.33 -2.28 16 18 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.10 -2.34 5.06 -24.96 -0.13 -2.47 16 20 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 21 H 0.05 1.07 8.07 -51.93 -0.42 0.65 16 22 H 0.04 0.93 7.76 -51.93 -0.40 0.52 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.07 1.24 7.65 -51.93 -0.40 0.84 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.07 1.47 7.65 -51.93 -0.40 1.08 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.69 7.22 -51.93 -0.37 1.31 16 30 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 LS Contribution 236.72 15.07 3.57 3.57 Total: -1.00 -28.39 236.72 -7.71 -36.11 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.91 Total: -3.18 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -2.03 Total: -27.80 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.69 Total: -25.34 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.39 -7.71 -36.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251098490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.879 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds