Wall clock time and date at job start Mon Mar 30 2020 01:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08999 * 110.79657 * 303.33962 * 9 7 2 11 11 C 1.55045 * 110.90348 * 179.71902 * 9 7 2 12 12 C 1.54313 * 103.94416 * 201.72962 * 11 9 7 13 13 H 1.08999 * 111.54259 * 146.72736 * 12 11 9 14 14 C 1.54320 * 108.78810 * 270.93626 * 12 11 9 15 15 C 1.55055 * 103.94160 * 138.90189 * 14 12 11 16 16 C 1.55060 * 102.10854 * 319.93855 * 15 14 12 17 17 C 1.54315 * 103.94146 * 40.06487 * 16 15 14 18 18 H 1.08998 * 111.53700 * 96.88108 * 17 16 15 19 19 C 1.54314 * 108.78489 * 221.08942 * 17 16 15 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.08996 * 110.53654 * 320.34907 * 11 9 7 22 22 H 1.09006 * 110.53165 * 83.11691 * 11 9 7 23 23 H 1.08994 * 110.53431 * 257.51766 * 14 12 11 24 24 H 1.09004 * 110.53332 * 20.29297 * 14 12 11 25 25 H 1.08994 * 110.90603 * 201.73261 * 15 14 12 26 26 H 1.09007 * 110.93071 * 78.14954 * 15 14 12 27 27 H 1.08999 * 110.52977 * 281.44657 * 16 15 14 28 28 H 1.09001 * 110.53356 * 158.67994 * 16 15 14 29 29 H 1.09002 * 110.53319 * 330.44699 * 19 17 16 30 30 H 1.09002 * 110.53616 * 207.67565 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.5688 -2.5560 0.8429 11 6 2.2286 -3.7025 -0.0107 12 6 1.3834 -4.8659 -0.5704 13 1 1.9900 -5.5547 -1.1584 14 6 0.6726 -5.5731 0.6026 15 6 -0.7505 -5.8610 0.0583 16 6 -1.0663 -4.5630 -0.7290 17 6 0.2665 -4.2172 -1.4258 18 1 0.2865 -4.5797 -2.4535 19 6 0.4899 -2.6926 -1.3423 20 1 -0.4850 0.8401 -0.0004 21 1 3.0797 -3.5008 -0.6611 22 1 2.5646 -3.9266 1.0018 23 1 1.1817 -6.5038 0.8530 24 1 0.6239 -4.9170 1.4717 25 1 -1.4581 -6.0024 0.8751 26 1 -0.7462 -6.7265 -0.6044 27 1 -1.3600 -3.7646 -0.0476 28 1 -1.8478 -4.7440 -1.4669 29 1 -0.4648 -2.1670 -1.3183 30 1 1.0959 -2.3485 -2.1805 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251098490.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:17 Heat of formation + Delta-G solvation = -49.232200 kcal Electronic energy + Delta-G solvation = -11161.142050 eV Core-core repulsion = 9339.932794 eV Total energy + Delta-G solvation = -1821.209256 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.38845 -35.49802 -33.30977 -31.08437 -28.92672 -25.89193 -25.62934 -21.74748 -20.85801 -19.50080 -18.48007 -16.78506 -16.20874 -15.34985 -15.25062 -14.61811 -14.41477 -13.70979 -13.27620 -12.90759 -12.68566 -12.35768 -11.94247 -11.83145 -11.53318 -11.46997 -11.30252 -11.25291 -11.21374 -10.78014 -10.66259 -10.43183 -8.11874 -6.21250 1.38006 1.39399 1.51275 2.42819 3.18332 3.77058 3.85336 3.94993 4.50180 4.56398 4.64149 4.73218 4.79099 4.86327 4.88942 4.98288 5.12068 5.22911 5.24125 5.32314 5.33897 5.42590 5.49141 5.65964 5.67533 5.75952 5.99810 6.03291 6.42210 6.90642 7.45864 8.97317 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.073072 B = 0.012240 C = 0.011435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.089395 B = 2287.067740 C = 2447.995703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.045 3.955 10 H -0.001 1.001 11 C -0.110 4.110 12 C -0.090 4.090 13 H 0.086 0.914 14 C -0.115 4.115 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.097 4.097 18 H 0.076 0.924 19 C -0.092 4.092 20 H 0.259 0.741 21 H 0.045 0.955 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.108 -9.658 -1.228 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.027 3.973 10 H 0.017 0.983 11 C -0.147 4.147 12 C -0.108 4.108 13 H 0.104 0.896 14 C -0.153 4.153 15 C -0.152 4.152 16 C -0.155 4.155 17 C -0.115 4.115 18 H 0.095 0.905 19 C -0.130 4.130 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.099 0.901 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.034 -9.540 -1.222 9.618 hybrid contribution 0.258 1.461 0.047 1.484 sum 0.224 -8.079 -1.176 8.168 Atomic orbital electron populations 1.70106 1.07250 1.27002 1.51629 1.25786 0.95681 1.02440 0.94908 0.85592 0.79159 0.79828 0.77619 1.19084 1.20607 1.20564 1.21615 0.92919 0.92444 1.50254 0.93169 1.19548 0.92912 0.92016 0.92873 0.98294 1.22490 0.97752 0.95618 0.98872 1.22478 0.95967 0.96112 0.96270 0.89609 1.22468 0.96141 0.99740 0.96908 1.22542 0.96220 0.96997 0.99444 1.22454 0.96677 0.97548 0.98821 1.22558 0.95168 0.95192 0.98620 0.90522 1.22248 0.98801 0.93691 0.98306 0.93192 0.93569 0.93237 0.90080 0.93527 0.91246 0.89697 0.94287 0.91293 0.94712 0.95632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 12.42 21.45 0.27 -55.18 16 2 C 0.01 0.59 5.37 84.66 0.45 1.04 16 3 Si 0.95 45.04 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 7 C -0.53 -30.79 8.54 25.60 0.22 -30.58 16 8 H 0.05 2.85 7.78 -2.91 -0.02 2.83 16 9 C 0.04 2.35 2.63 -10.14 -0.03 2.32 16 10 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 11 C -0.11 -4.67 5.51 31.74 0.17 -4.50 16 12 C -0.09 -3.13 3.78 -9.24 -0.03 -3.17 16 13 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 14 C -0.12 -3.52 6.18 31.75 0.20 -3.33 16 15 C -0.11 -3.17 6.92 32.00 0.22 -2.95 16 16 C -0.12 -4.05 6.18 31.75 0.20 -3.85 16 17 C -0.10 -3.65 3.78 -9.25 -0.03 -3.69 16 18 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 19 C -0.09 -4.50 5.06 31.74 0.16 -4.34 16 20 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 21 H 0.05 1.96 8.07 -2.39 -0.02 1.94 16 22 H 0.05 2.02 7.76 -2.38 -0.02 2.00 16 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.05 1.63 7.65 -2.38 -0.02 1.61 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.04 1.59 7.65 -2.39 -0.02 1.58 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.03 1.86 7.22 -2.39 -0.02 1.85 16 30 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 Total: -1.00 -62.15 236.72 4.90 -57.25 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.08 Total: 3.89 kcal Atomic # 6 Polarization: -54.55 SS G_CDS: 1.53 Total: -53.03 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.27 Total: -55.18 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -62.15 4.90 -57.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251098490.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.019 kcal (2) G-P(sol) polarization free energy of solvation -62.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds