Wall clock time and date at job start Mon Mar 30 2020 01:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99779 * 2 1 4 4 C 1.50699 * 109.47324 * 270.00098 * 3 2 1 5 5 H 1.08005 * 119.99844 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00250 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99856 * 0.02562 * 6 4 3 8 8 Si 1.86792 * 120.00176 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47166 * 90.00153 * 8 6 4 10 10 H 1.48502 * 109.47553 * 210.00110 * 8 6 4 11 11 H 1.48500 * 109.47543 * 329.99888 * 8 6 4 12 12 C 1.40782 * 120.00287 * 180.02562 * 2 1 3 13 13 C 1.41202 * 126.32783 * 359.97438 * 12 2 1 14 14 C 1.34875 * 107.50573 * 180.02562 * 13 12 2 15 15 N 1.36288 * 108.36082 * 359.97438 * 14 13 12 16 16 H 0.97001 * 125.63580 * 179.97438 * 15 14 13 17 17 C 1.35251 * 126.32910 * 180.27186 * 12 2 1 18 18 H 1.09003 * 109.47359 * 269.99654 * 1 2 3 19 19 H 1.08994 * 109.47614 * 29.99950 * 1 2 3 20 20 H 1.09005 * 109.47017 * 150.00171 * 1 2 3 21 21 H 1.09001 * 109.47160 * 30.00575 * 3 2 1 22 22 H 1.09003 * 109.47354 * 150.00040 * 3 2 1 23 23 H 0.97005 * 120.00409 * 180.02562 * 7 6 4 24 24 H 1.07995 * 126.25170 * 359.97438 * 13 12 2 25 25 H 1.07996 * 125.82239 * 179.97438 * 14 13 12 26 26 H 1.07992 * 125.96809 * 0.02562 * 17 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.5531 3.6182 -0.6731 8 14 3.4377 3.4170 -3.4338 9 1 2.3075 4.2592 -3.9013 10 1 4.6977 4.2005 -3.4960 11 1 3.5560 2.2198 -4.3044 12 6 2.1689 -1.2192 -0.0005 13 6 1.6021 -2.5124 -0.0006 14 6 2.6173 -3.4004 -0.0006 15 7 3.7920 -2.7094 -0.0012 16 1 4.6788 -3.1024 -0.0009 17 6 3.5132 -1.3682 0.0046 18 1 -0.3634 -0.0001 1.0277 19 1 -0.3634 0.8899 -0.5138 20 1 -0.3633 -0.8900 -0.5138 21 1 1.6083 2.0284 0.5139 22 1 3.1499 1.1385 0.5138 23 1 4.0293 4.4445 -0.8503 24 1 0.5480 -2.7477 0.0001 25 1 2.5165 -4.4756 -0.0003 26 1 4.2399 -0.5694 0.0102 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258893089.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:30 Heat of formation + Delta-G solvation = 53.877431 kcal Electronic energy + Delta-G solvation = -10498.627327 eV Core-core repulsion = 8578.348897 eV Total energy + Delta-G solvation = -1920.278430 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.12038 -35.38551 -32.47695 -29.59155 -28.11513 -27.29996 -24.27004 -22.11831 -19.85889 -18.22868 -17.55217 -16.28064 -14.68875 -13.99415 -13.69719 -13.43258 -12.89345 -12.76524 -12.25496 -11.96217 -11.26155 -11.18654 -11.02161 -10.64732 -10.38628 -9.91226 -9.63647 -8.71355 -8.37696 -7.64512 -6.15118 -5.69304 -4.01622 3.01596 3.33097 3.39207 3.44315 3.98159 4.06321 4.46902 4.78542 5.34680 5.66382 6.04191 6.19386 6.29889 6.36387 6.56480 6.67954 6.88736 7.26595 7.50578 7.56104 7.77643 7.96460 8.32342 8.39047 8.69881 8.95277 9.13759 9.65247 11.09649 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.050900 B = 0.012045 C = 0.011049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.963284 B = 2324.017188 C = 2533.560255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.625 5.625 3 C 0.263 3.737 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.057 3.943 7 N -0.900 5.900 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.150 3.850 13 C -0.252 4.252 14 C -0.008 4.008 15 N -0.564 5.564 16 H 0.407 0.593 17 C -0.102 4.102 18 H 0.022 0.978 19 H 0.057 0.943 20 H 0.044 0.956 21 H 0.023 0.977 22 H 0.026 0.974 23 H 0.261 0.739 24 H 0.124 0.876 25 H 0.153 0.847 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 -9.873 1.178 10.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.341 5.341 3 C 0.143 3.857 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.144 4.144 7 N -0.540 5.540 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.045 3.955 13 C -0.282 4.282 14 C -0.142 4.142 15 N -0.162 5.162 16 H 0.242 0.758 17 C -0.234 4.234 18 H 0.041 0.959 19 H 0.076 0.924 20 H 0.063 0.937 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.142 0.858 25 H 0.170 0.830 26 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.178 -9.575 1.219 9.724 hybrid contribution 0.548 0.294 -1.054 1.224 sum -0.630 -9.281 0.164 9.304 Atomic orbital electron populations 1.21179 0.82063 1.00857 0.98559 1.46229 1.03038 1.02850 1.81982 1.19002 0.91500 0.79237 0.96009 1.21751 1.35293 1.05864 0.93352 0.92402 1.24980 0.95812 0.96493 0.97091 1.69944 1.39075 1.14375 1.30571 0.86574 0.77567 0.78574 0.85174 1.20710 1.21272 1.19971 1.17170 0.90705 0.86243 1.01340 1.20462 0.97943 0.91605 1.18202 1.21426 0.85016 0.96761 1.10972 1.41592 1.07237 1.06295 1.61034 0.75804 1.21120 0.96099 0.84332 1.21801 0.95925 0.92400 0.93693 0.95869 0.95639 0.92912 0.85808 0.82989 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.33 10.49 59.84 0.63 2.96 15 2 N -0.63 -14.70 3.02 -181.01 -0.55 -15.25 15 3 C 0.26 7.06 5.19 -5.19 -0.03 7.03 15 4 C -0.52 -15.05 9.39 -34.44 -0.32 -15.38 15 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 15 6 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 7 N -0.90 -26.77 13.29 55.43 0.74 -26.04 15 8 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 15 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 15 12 C 0.15 3.29 6.72 -83.68 -0.56 2.73 15 13 C -0.25 -4.67 9.98 -39.65 -0.40 -5.07 15 14 C -0.01 -0.13 11.93 -16.77 -0.20 -0.33 15 15 N -0.56 -9.09 6.10 -12.61 -0.08 -9.17 15 16 H 0.41 4.95 8.96 -40.82 -0.37 4.58 15 17 C -0.10 -2.11 11.11 -16.31 -0.18 -2.29 15 18 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 15 19 H 0.06 1.15 8.07 -51.93 -0.42 0.73 15 20 H 0.04 0.80 6.96 -51.93 -0.36 0.43 15 21 H 0.02 0.65 8.07 -51.93 -0.42 0.23 15 22 H 0.03 0.72 6.89 -51.93 -0.36 0.36 15 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 24 H 0.12 2.08 7.40 -52.49 -0.39 1.69 15 25 H 0.15 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.16 3.47 7.25 -52.49 -0.38 3.09 15 LS Contribution 229.44 15.07 3.46 3.46 Total: -1.00 -31.69 229.44 -5.69 -37.39 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.08 Total: 1.44 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.16 Total: -8.80 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: 0.11 Total: -50.45 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.69 -5.69 -37.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258893089.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.263 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds