Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00634 * 2 1 4 4 C 1.50703 * 109.47123 * 270.27914 * 3 2 1 5 5 H 1.07999 * 120.00029 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99852 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00011 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00020 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47418 * 89.99660 * 8 6 4 10 10 H 1.48505 * 109.46948 * 209.99807 * 8 6 4 11 11 H 1.48501 * 109.47143 * 329.99502 * 8 6 4 12 12 C 1.39525 * 119.99494 * 180.27933 * 2 1 3 13 13 C 1.35586 * 125.94813 * 359.72203 * 12 2 1 14 14 C 1.41005 * 107.42930 * 179.97438 * 13 12 2 15 15 C 1.34730 * 107.53289 * 0.02562 * 14 13 12 16 16 N 1.36490 * 125.94684 * 179.41524 * 12 2 1 17 17 H 0.96996 * 125.68304 * 359.97438 * 16 12 2 18 18 H 1.09000 * 109.46904 * 269.72562 * 1 2 3 19 19 H 1.08998 * 109.46807 * 29.71644 * 1 2 3 20 20 H 1.08996 * 109.47704 * 149.72217 * 1 2 3 21 21 H 1.09004 * 109.46504 * 30.27718 * 3 2 1 22 22 H 1.08997 * 109.47318 * 150.27419 * 3 2 1 23 23 H 0.96995 * 120.00551 * 180.02562 * 7 6 4 24 24 H 1.07998 * 126.28660 * 359.97438 * 13 12 2 25 25 H 1.07996 * 126.22891 * 180.02562 * 14 13 12 26 26 H 1.08001 * 125.84933 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4429 1.7071 -1.4208 5 1 2.0888 1.1011 -2.2417 6 6 3.1193 2.8819 -1.6727 7 7 3.3337 3.2643 -2.9126 8 14 3.7323 3.9295 -0.2529 9 1 5.1073 3.5074 0.1162 10 1 3.7455 5.3573 -0.6610 11 1 2.8312 3.7568 0.9148 12 6 2.1625 -1.2084 -0.0059 13 6 1.6098 -2.4465 -0.0066 14 6 2.6661 -3.3805 -0.0139 15 6 3.8212 -2.6870 -0.0169 16 7 3.5200 -1.3499 -0.0179 17 1 4.1644 -0.6249 -0.0241 18 1 -0.3633 -0.0049 1.0277 19 1 -0.3633 0.8925 -0.5094 20 1 -0.3634 -0.8874 -0.5181 21 1 1.6107 2.0270 0.5182 22 1 3.1521 1.1370 0.5095 23 1 3.8099 4.0905 -3.0899 24 1 0.5544 -2.6753 -0.0023 25 1 2.5672 -4.4559 -0.0167 26 1 4.8141 -3.1119 -0.0228 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258917723.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = 55.690752 kcal Electronic energy + Delta-G solvation = -10572.782827 eV Core-core repulsion = 8652.583028 eV Total energy + Delta-G solvation = -1920.199798 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.24146 -35.61444 -32.60540 -30.34391 -28.57015 -27.35902 -24.61013 -21.82950 -19.60986 -19.13298 -17.37632 -16.98483 -14.67388 -14.22139 -14.06405 -13.63026 -12.85674 -12.65248 -12.54771 -12.13161 -11.65975 -11.56215 -11.24453 -10.70609 -10.66427 -10.28996 -9.63428 -8.73916 -8.59263 -8.16073 -6.21719 -6.09648 -4.22005 3.14726 3.19611 3.24122 3.24711 3.66860 3.84579 4.25619 4.52538 5.08697 5.85337 5.85971 6.08216 6.09474 6.25465 6.35912 6.55621 6.66015 6.79728 6.94007 7.44138 7.47453 7.57125 8.05871 8.21848 8.48307 8.73302 8.88742 9.39159 10.92002 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.052360 B = 0.012838 C = 0.011861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.627463 B = 2180.574739 C = 2360.109625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.617 5.617 3 C 0.225 3.775 4 C -0.541 4.541 5 H 0.077 0.923 6 C 0.072 3.928 7 N -0.893 5.893 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.346 3.654 13 C -0.310 4.310 14 C -0.169 4.169 15 C -0.063 4.063 16 N -0.575 5.575 17 H 0.413 0.587 18 H 0.033 0.967 19 H 0.067 0.933 20 H 0.057 0.943 21 H 0.031 0.969 22 H 0.011 0.989 23 H 0.266 0.734 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.195 -6.376 6.908 9.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.334 5.334 3 C 0.104 3.896 4 C -0.580 4.580 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.531 5.531 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.190 1.190 12 C 0.133 3.867 13 C -0.338 4.338 14 C -0.194 4.194 15 C -0.190 4.190 16 N -0.180 5.180 17 H 0.249 0.751 18 H 0.051 0.949 19 H 0.085 0.915 20 H 0.075 0.925 21 H 0.049 0.951 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.081 -6.005 6.796 9.133 hybrid contribution 0.741 1.075 0.463 1.385 sum -0.340 -4.931 7.259 8.782 Atomic orbital electron populations 1.21298 0.79350 1.02170 0.99473 1.45844 1.04206 1.01894 1.81432 1.19498 0.91224 0.81509 0.97406 1.21591 1.37096 1.07417 0.91858 0.90466 1.24942 0.95443 0.97219 0.95505 1.69902 1.41102 1.23401 1.18680 0.86899 0.79730 0.80335 0.83047 1.20076 1.20799 1.18972 1.17447 0.81914 0.87543 0.99819 1.19963 0.98236 0.89909 1.25731 1.20450 0.92001 0.97870 1.09129 1.21337 0.98955 0.81831 1.16850 1.41835 1.05614 1.07823 1.62696 0.75061 0.94858 0.91458 0.92463 0.95130 0.97080 0.92435 0.85943 0.85856 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.16 10.43 59.85 0.62 2.78 15 2 N -0.62 -13.28 2.99 -182.84 -0.55 -13.83 15 3 C 0.23 5.31 4.32 -5.20 -0.02 5.29 15 4 C -0.54 -15.00 9.94 -34.44 -0.34 -15.34 15 5 H 0.08 2.42 8.06 -52.49 -0.42 2.00 15 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 7 N -0.89 -26.78 13.96 55.43 0.77 -26.01 15 8 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 15 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 11 H -0.27 -5.94 6.54 56.52 0.37 -5.57 15 12 C 0.35 7.27 7.51 -152.18 -1.14 6.12 15 13 C -0.31 -6.00 9.97 -39.48 -0.39 -6.40 15 14 C -0.17 -2.96 10.85 -39.78 -0.43 -3.39 15 15 C -0.06 -1.09 11.95 -16.46 -0.20 -1.28 15 16 N -0.58 -11.26 5.89 -11.88 -0.07 -11.33 15 17 H 0.41 7.83 7.93 -40.82 -0.32 7.51 15 18 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 19 H 0.07 1.21 8.07 -51.93 -0.42 0.79 15 20 H 0.06 0.94 6.85 -51.93 -0.36 0.59 15 21 H 0.03 0.71 7.13 -51.93 -0.37 0.34 15 22 H 0.01 0.26 6.50 -51.93 -0.34 -0.08 15 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 24 H 0.12 2.17 7.23 -52.49 -0.38 1.79 15 25 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.15 2.09 8.06 -52.49 -0.42 1.66 15 LS Contribution 225.84 15.07 3.40 3.40 Total: -1.00 -30.60 225.84 -6.16 -36.75 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.04 Total: 5.50 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -2.00 Total: -10.30 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.16 Total: -51.17 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.60 -6.16 -36.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258917723.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.442 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds