Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 120.00634 * 2 1 4 4 C 1.50703 * 109.47123 * 270.27914 * 3 2 1 5 5 H 1.07999 * 120.00029 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99852 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00011 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00020 * 0.02562 * 6 4 3 9 9 H 1.48496 * 109.47418 * 89.99660 * 8 6 4 10 10 H 1.48505 * 109.46948 * 209.99807 * 8 6 4 11 11 H 1.48501 * 109.47143 * 329.99502 * 8 6 4 12 12 C 1.39525 * 119.99494 * 180.27933 * 2 1 3 13 13 C 1.35586 * 125.94813 * 359.72203 * 12 2 1 14 14 C 1.41005 * 107.42930 * 179.97438 * 13 12 2 15 15 C 1.34730 * 107.53289 * 0.02562 * 14 13 12 16 16 N 1.36490 * 125.94684 * 179.41524 * 12 2 1 17 17 H 0.96996 * 125.68304 * 359.97438 * 16 12 2 18 18 H 1.09000 * 109.46904 * 269.72562 * 1 2 3 19 19 H 1.08998 * 109.46807 * 29.71644 * 1 2 3 20 20 H 1.08996 * 109.47704 * 149.72217 * 1 2 3 21 21 H 1.09004 * 109.46504 * 30.27718 * 3 2 1 22 22 H 1.08997 * 109.47318 * 150.27419 * 3 2 1 23 23 H 0.96995 * 120.00551 * 180.02562 * 7 6 4 24 24 H 1.07998 * 126.28660 * 359.97438 * 13 12 2 25 25 H 1.07996 * 126.22891 * 180.02562 * 14 13 12 26 26 H 1.08001 * 125.84933 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4429 1.7071 -1.4208 5 1 2.0888 1.1011 -2.2417 6 6 3.1193 2.8819 -1.6727 7 7 3.3337 3.2643 -2.9126 8 14 3.7323 3.9295 -0.2529 9 1 5.1073 3.5074 0.1162 10 1 3.7455 5.3573 -0.6610 11 1 2.8312 3.7568 0.9148 12 6 2.1625 -1.2084 -0.0059 13 6 1.6098 -2.4465 -0.0066 14 6 2.6661 -3.3805 -0.0139 15 6 3.8212 -2.6870 -0.0169 16 7 3.5200 -1.3499 -0.0179 17 1 4.1644 -0.6249 -0.0241 18 1 -0.3633 -0.0049 1.0277 19 1 -0.3633 0.8925 -0.5094 20 1 -0.3634 -0.8874 -0.5181 21 1 1.6107 2.0270 0.5182 22 1 3.1521 1.1370 0.5095 23 1 3.8099 4.0905 -3.0899 24 1 0.5544 -2.6753 -0.0023 25 1 2.5672 -4.4559 -0.0167 26 1 4.8141 -3.1119 -0.0228 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258917723.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = 36.252378 kcal Electronic energy + Delta-G solvation = -10573.625738 eV Core-core repulsion = 8652.583028 eV Total energy + Delta-G solvation = -1921.042710 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.69615 -37.26007 -34.68006 -31.85834 -30.39207 -28.81679 -26.31783 -23.63537 -21.05221 -20.61408 -19.11229 -18.92627 -16.57080 -15.85790 -15.56731 -15.26121 -14.57894 -14.25877 -14.09431 -13.65210 -13.30351 -13.26074 -12.71087 -12.44913 -12.34020 -12.05062 -11.76453 -10.86808 -10.19195 -9.59907 -8.36675 -7.63168 -6.43988 1.32312 1.34678 1.45389 1.75394 2.20823 2.27902 2.38892 2.96461 2.99130 4.41308 4.55808 4.66084 4.66782 4.75044 4.86442 4.93623 4.99186 5.36980 5.41758 5.48872 5.95136 6.02065 6.23175 6.60207 6.65872 6.83045 7.17589 7.26565 8.80634 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.052360 B = 0.012838 C = 0.011861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.627463 B = 2180.574739 C = 2360.109625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.631 5.631 3 C 0.235 3.765 4 C -0.544 4.544 5 H 0.023 0.977 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.950 3.050 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.244 1.244 12 C 0.306 3.694 13 C -0.313 4.313 14 C -0.181 4.181 15 C -0.056 4.056 16 N -0.585 5.585 17 H 0.411 0.589 18 H 0.059 0.941 19 H 0.057 0.943 20 H 0.066 0.934 21 H 0.039 0.961 22 H 0.021 0.979 23 H 0.269 0.731 24 H 0.133 0.867 25 H 0.153 0.847 26 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -6.930 8.847 11.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.349 5.349 3 C 0.113 3.887 4 C -0.583 4.583 5 H 0.041 0.959 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.772 3.228 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.167 1.167 12 C 0.094 3.906 13 C -0.342 4.342 14 C -0.206 4.206 15 C -0.183 4.183 16 N -0.189 5.189 17 H 0.248 0.752 18 H 0.077 0.923 19 H 0.076 0.924 20 H 0.085 0.915 21 H 0.057 0.943 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.151 0.849 25 H 0.170 0.830 26 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -0.604 -6.600 8.747 10.974 hybrid contribution 0.564 1.116 -0.234 1.273 sum -0.040 -5.483 8.513 10.126 Atomic orbital electron populations 1.21444 0.77779 1.02197 1.01084 1.45896 1.05311 1.01422 1.82260 1.19241 0.92145 0.82877 0.94486 1.21743 1.36809 1.06970 0.92769 0.95893 1.25923 0.95448 0.98658 0.98563 1.70070 1.42520 1.24323 1.21556 0.85683 0.79835 0.77782 0.79480 1.18700 1.20668 1.16724 1.17827 0.82741 0.87854 1.02134 1.20319 0.99386 0.89847 1.24609 1.20857 0.91432 0.99249 1.09041 1.22048 1.00723 0.80846 1.14648 1.42041 1.05289 1.08786 1.62793 0.75212 0.92278 0.92392 0.91531 0.94295 0.96063 0.92215 0.84896 0.82963 0.79425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.11 10.43 127.77 1.33 5.45 15 2 N -0.63 -26.83 2.99 -732.38 -2.19 -29.02 15 3 C 0.24 10.93 4.32 85.64 0.37 11.30 15 4 C -0.54 -30.81 9.94 25.60 0.25 -30.56 15 5 H 0.02 1.50 8.06 -2.91 -0.02 1.48 15 6 C 0.01 0.70 5.47 84.66 0.46 1.17 15 7 N -0.95 -58.09 13.96 21.45 0.30 -57.79 15 8 Si 0.95 41.67 27.47 68.60 1.88 43.56 15 9 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 11 H -0.24 -9.80 6.54 99.48 0.65 -9.15 15 12 C 0.31 12.58 7.51 130.79 0.98 13.56 15 13 C -0.31 -11.61 9.97 22.33 0.22 -11.38 15 14 C -0.18 -5.86 10.85 22.14 0.24 -5.62 15 15 C -0.06 -1.80 11.95 83.07 0.99 -0.80 15 16 N -0.58 -22.15 5.89 -191.51 -1.13 -23.28 15 17 H 0.41 15.26 7.93 -92.71 -0.74 14.53 15 18 H 0.06 1.74 8.14 -2.39 -0.02 1.72 15 19 H 0.06 2.08 8.07 -2.39 -0.02 2.06 15 20 H 0.07 2.14 6.85 -2.39 -0.02 2.13 15 21 H 0.04 1.74 7.13 -2.38 -0.02 1.73 15 22 H 0.02 0.95 6.50 -2.39 -0.02 0.93 15 23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 24 H 0.13 4.49 7.23 -2.91 -0.02 4.47 15 25 H 0.15 3.95 8.06 -2.91 -0.02 3.93 15 26 H 0.19 4.45 8.06 -2.91 -0.02 4.43 15 Total: -1.00 -66.45 225.84 4.11 -62.34 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.38 Total: 21.08 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 4.86 Total: -16.89 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -3.02 Total: -110.09 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.56 kcal Total: -66.45 4.11 -62.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258917723.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.594 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds