Wall clock time and date at job start Mon Mar 30 2020 02:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35777 * 117.00223 * 2 1 4 4 C 1.39888 * 126.54426 * 0.02562 * 3 2 1 5 5 C 1.35648 * 108.14278 * 179.75446 * 4 3 2 6 6 N 1.36376 * 109.24060 * 0.37152 * 5 4 3 7 7 C 1.46493 * 125.72044 * 179.88991 * 6 5 4 8 8 C 1.38302 * 108.56539 * 359.62475 * 6 5 4 9 9 C 1.39749 * 126.43112 * 180.24488 * 8 6 5 10 10 H 1.07994 * 119.99784 * 330.53979 * 9 8 6 11 11 C 1.39981 * 119.99678 * 150.53688 * 9 8 6 12 12 N 1.30977 * 120.00127 * 340.96544 * 11 9 8 13 13 Si 1.86805 * 119.99758 * 160.96576 * 11 9 8 14 14 H 1.48497 * 109.46762 * 89.99831 * 13 11 9 15 15 H 1.48499 * 109.47106 * 210.00096 * 13 11 9 16 16 H 1.48499 * 109.46903 * 330.00124 * 13 11 9 17 17 H 1.09001 * 109.47206 * 300.00343 * 1 2 3 18 18 H 1.09002 * 109.46753 * 60.00142 * 1 2 3 19 19 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 20 20 H 1.08001 * 125.93004 * 359.97438 * 4 3 2 21 21 H 1.07988 * 125.37862 * 180.22651 * 5 4 3 22 22 H 1.09002 * 109.47132 * 269.69603 * 7 6 5 23 23 H 1.08994 * 109.47816 * 149.69184 * 7 6 5 24 24 H 1.09008 * 109.47240 * 29.69147 * 7 6 5 25 25 H 0.96997 * 119.99537 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.4223 2.4622 0.0005 5 6 2.3882 3.4146 0.0058 6 7 3.6123 2.8133 0.0004 7 6 4.9043 3.5037 0.0013 8 6 3.4295 1.4424 0.0000 9 6 4.4343 0.4711 -0.0001 10 1 5.3886 0.6815 -0.4598 11 6 4.2037 -0.7744 0.5958 12 7 3.2301 -0.9166 1.4603 13 14 5.2847 -2.2336 0.1580 14 1 6.4458 -2.2843 1.0824 15 1 4.4982 -3.4871 0.2818 16 1 5.7695 -2.0892 -1.2382 17 1 -0.3634 0.5139 0.8900 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 0.3571 2.6400 0.0006 21 1 2.2153 4.4805 0.0110 22 1 5.2253 3.6752 -1.0261 23 1 5.6440 2.8899 0.5154 24 1 4.8051 4.4598 0.5154 25 1 3.0706 -1.7796 1.8734 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259468396.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:26 Heat of formation + Delta-G solvation = 13.070278 kcal Electronic energy + Delta-G solvation = -10978.895741 eV Core-core repulsion = 8959.129118 eV Total energy + Delta-G solvation = -2019.766623 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.16343 -36.10927 -33.10057 -30.82788 -28.41094 -25.99774 -24.81636 -23.67229 -19.20087 -18.65213 -17.08902 -15.34889 -14.74145 -14.13587 -13.75342 -13.50842 -13.45050 -12.73980 -12.09294 -11.43585 -11.26841 -11.19322 -10.94174 -10.86622 -10.27846 -10.12469 -9.52284 -9.29477 -8.79805 -6.97686 -6.40084 -6.05070 -3.83800 3.15968 3.27598 3.32445 3.80605 4.18465 4.42184 4.63202 5.40065 5.50165 5.82672 6.10674 6.27274 6.29892 6.34299 6.37850 6.46244 6.80608 7.37349 7.45208 7.60445 8.15382 8.38298 8.42542 8.92824 9.26475 9.33381 9.75710 10.66543 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.020536 C = 0.013895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.912811 B = 1363.161789 C = 2014.570114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.268 6.268 3 C -0.067 4.067 4 C -0.226 4.226 5 C -0.113 4.113 6 N -0.476 5.476 7 C 0.100 3.900 8 C 0.214 3.786 9 C -0.476 4.476 10 H 0.067 0.933 11 C 0.087 3.913 12 N -0.770 5.770 13 Si 0.903 3.097 14 H -0.277 1.277 15 H -0.279 1.279 16 H -0.266 1.266 17 H 0.027 0.973 18 H 0.023 0.977 19 H 0.068 0.932 20 H 0.104 0.896 21 H 0.128 0.872 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 2.399 -1.379 2.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.181 6.181 3 C -0.114 4.114 4 C -0.253 4.253 5 C -0.238 4.238 6 N -0.161 5.161 7 C -0.043 4.043 8 C 0.105 3.895 9 C -0.511 4.511 10 H 0.085 0.915 11 C -0.132 4.132 12 N -0.396 5.396 13 Si 0.728 3.272 14 H -0.203 1.203 15 H -0.205 1.205 16 H -0.190 1.190 17 H 0.046 0.954 18 H 0.041 0.959 19 H 0.087 0.913 20 H 0.122 0.878 21 H 0.145 0.855 22 H 0.065 0.935 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.250 2.268 -1.226 2.590 hybrid contribution 0.043 -0.404 -0.113 0.421 sum 0.293 1.864 -1.339 2.314 Atomic orbital electron populations 1.22494 0.84064 1.00198 0.98524 1.86065 1.15498 1.25396 1.91105 1.18014 0.90909 0.82814 1.19682 1.20328 0.96419 0.93164 1.15426 1.20690 0.84017 0.95921 1.23196 1.43868 1.04165 1.05997 1.62032 1.21464 0.85559 0.96541 1.00723 1.17035 0.91370 0.79818 1.01266 1.17992 0.99681 0.96922 1.36497 0.91463 1.25458 0.95311 0.99220 0.93221 1.69849 1.26095 1.24861 1.18779 0.86431 0.80012 0.81047 0.79676 1.20264 1.20459 1.19029 0.95425 0.95852 0.91334 0.87789 0.85475 0.93542 0.90634 0.92182 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 10.18 101.05 1.03 1.99 15 2 O -0.27 -7.42 8.08 -19.04 -0.15 -7.57 15 3 C -0.07 -1.91 6.50 -38.18 -0.25 -2.16 15 4 C -0.23 -5.76 9.87 -39.89 -0.39 -6.15 15 5 C -0.11 -2.71 11.40 -16.46 -0.19 -2.89 15 6 N -0.48 -11.81 3.20 -121.28 -0.39 -12.20 15 7 C 0.10 1.92 10.93 59.84 0.65 2.57 15 8 C 0.21 6.11 6.40 -83.59 -0.53 5.58 15 9 C -0.48 -13.49 8.67 -38.36 -0.33 -13.82 15 10 H 0.07 1.80 7.91 -52.49 -0.42 1.39 15 11 C 0.09 2.39 5.06 -17.26 -0.09 2.30 15 12 N -0.77 -21.92 10.85 55.55 0.60 -21.31 15 13 Si 0.90 20.36 29.60 -169.99 -5.03 15.33 15 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 15 H -0.28 -6.22 7.11 56.52 0.40 -5.81 15 16 H -0.27 -5.96 7.11 56.52 0.40 -5.55 15 17 H 0.03 0.58 8.10 -51.93 -0.42 0.15 15 18 H 0.02 0.46 8.10 -51.93 -0.42 0.04 15 19 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 20 H 0.10 2.38 7.72 -52.49 -0.41 1.97 15 21 H 0.13 2.57 8.06 -52.49 -0.42 2.14 15 22 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.07 1.45 7.81 -51.93 -0.41 1.04 15 24 H 0.06 0.96 8.14 -51.92 -0.42 0.54 15 25 H 0.27 7.15 8.30 -40.82 -0.34 6.81 15 LS Contribution 222.50 15.07 3.35 3.35 Total: -1.00 -32.04 222.50 -4.61 -36.66 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -2.89 Total: -1.67 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -0.10 Total: -12.58 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.21 Total: -33.52 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.15 Total: -7.57 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -32.04 -4.61 -36.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259468396.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.728 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds