Wall clock time and date at job start Mon Mar 30 2020 01:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99947 * 2 1 4 4 H 1.08999 * 109.46745 * 326.81018 * 3 2 1 5 5 C 1.50700 * 109.46709 * 206.81358 * 3 2 1 6 6 H 1.08003 * 119.99658 * 239.99830 * 5 3 2 7 7 C 1.37872 * 120.00239 * 59.99870 * 5 3 2 8 8 N 1.31511 * 120.00074 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00033 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47239 * 60.00122 * 9 7 5 11 11 H 1.48500 * 109.47439 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47207 * 300.00118 * 9 7 5 13 13 C 1.50695 * 109.47219 * 86.81428 * 3 2 1 14 14 C 1.40893 * 126.29696 * 44.90143 * 13 3 2 15 15 C 1.34846 * 107.42057 * 179.97438 * 14 13 3 16 16 N 1.36342 * 108.21696 * 359.73416 * 15 14 13 17 17 H 0.97001 * 125.63474 * 180.26190 * 16 15 14 18 18 C 1.34861 * 126.28994 * 224.88112 * 13 3 2 19 19 H 1.08998 * 109.47564 * 304.28236 * 1 2 3 20 20 H 1.09001 * 109.47057 * 64.28382 * 1 2 3 21 21 H 1.09000 * 109.47399 * 184.28143 * 1 2 3 22 22 H 1.00901 * 110.99254 * 123.94720 * 2 1 3 23 23 H 0.96998 * 120.00096 * 179.97438 * 8 7 5 24 24 H 1.08008 * 126.28547 * 0.02562 * 14 13 3 25 25 H 1.08000 * 125.89262 * 179.97438 * 15 14 13 26 26 H 1.07993 * 125.88908 * 0.02562 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3227 2.0188 -0.5626 5 6 3.3592 1.3859 -0.6409 6 1 4.2172 1.7217 -0.0773 7 6 3.5118 0.9705 -1.9467 8 7 2.4672 0.5612 -2.6328 9 14 5.2022 0.9891 -2.7413 10 1 6.1192 0.1075 -1.9750 11 1 5.0977 0.4984 -4.1390 12 1 5.7339 2.3757 -2.7415 13 6 2.1017 1.8687 1.4186 14 6 2.6221 1.1545 2.5159 15 6 2.5353 1.9559 3.5970 16 7 1.9859 3.1409 3.2061 17 1 1.8126 3.9011 3.7831 18 6 1.7166 3.0794 1.8710 19 1 -0.3634 0.5788 0.8491 20 1 -0.3633 0.4459 -0.9259 21 1 -0.3634 -1.0248 0.0767 22 1 1.8305 -0.5261 0.7815 23 1 2.5744 0.2693 -3.5516 24 1 3.0185 0.1500 2.4949 25 1 2.8505 1.7041 4.5988 26 1 1.2754 3.8661 1.2771 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259490904.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:36 Heat of formation + Delta-G solvation = 30.119697 kcal Electronic energy + Delta-G solvation = -10655.194449 eV Core-core repulsion = 8733.885806 eV Total energy + Delta-G solvation = -1921.308643 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 180.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.71682 -37.02728 -33.96273 -31.74794 -30.00472 -28.27116 -25.54599 -23.44732 -21.47026 -20.02224 -18.81752 -18.34639 -16.37887 -15.76061 -15.02671 -14.58559 -14.43720 -14.34008 -13.82287 -13.54178 -13.23276 -12.75730 -12.72714 -12.47885 -12.10131 -11.60738 -11.12754 -10.42799 -9.34483 -8.81911 -8.55557 -7.86028 -6.05246 1.46005 1.48375 1.54649 1.58407 2.29467 2.57782 2.73054 3.33465 4.25285 4.48649 4.55938 4.65016 4.76524 4.85907 5.02391 5.15230 5.26271 5.52878 5.69739 5.89608 6.23231 6.33946 6.47365 6.78819 7.02703 7.15544 7.30695 7.65329 9.16429 Molecular weight = 180.10amu Principal moments of inertia in cm(-1) A = 0.045093 B = 0.014577 C = 0.012198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.785194 B = 1920.358846 C = 2294.899508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.669 5.669 3 C 0.284 3.716 4 H -0.003 1.003 5 C -0.527 4.527 6 H 0.040 0.960 7 C 0.032 3.968 8 N -0.888 5.888 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.274 1.274 13 C -0.184 4.184 14 C -0.226 4.226 15 C -0.008 4.008 16 N -0.550 5.550 17 H 0.427 0.573 18 C -0.043 4.043 19 H 0.004 0.996 20 H 0.034 0.966 21 H 0.061 0.939 22 H 0.318 0.682 23 H 0.253 0.747 24 H 0.122 0.878 25 H 0.198 0.802 26 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 3.430 10.705 11.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.298 5.298 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.566 4.566 6 H 0.058 0.942 7 C -0.170 4.170 8 N -0.525 5.525 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.200 1.200 13 C -0.193 4.193 14 C -0.252 4.252 15 C -0.139 4.139 16 N -0.147 5.147 17 H 0.266 0.734 18 C -0.174 4.174 19 H 0.022 0.978 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.135 0.865 23 H 0.062 0.938 24 H 0.140 0.860 25 H 0.215 0.785 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.461 3.422 9.920 10.595 hybrid contribution 0.510 0.468 0.297 0.753 sum -0.951 3.890 10.217 10.974 Atomic orbital electron populations 1.21930 0.90383 0.99817 0.97942 1.60818 1.05218 1.16235 1.47506 1.17354 0.93556 0.85289 0.86215 0.98462 1.21195 0.93919 1.44478 0.97019 0.94189 1.25660 0.99227 0.94403 0.97731 1.70187 1.30535 1.42615 1.09139 0.85839 0.81326 0.78216 0.77364 1.20112 1.21031 1.19994 1.20944 1.04531 0.96225 0.97559 1.20847 1.09934 1.01168 0.93205 1.22178 1.05192 0.86370 1.00183 1.41806 1.50055 1.14725 1.08116 0.73384 1.21726 1.10510 1.00007 0.85169 0.97801 0.94680 0.92005 0.86535 0.93812 0.86019 0.78495 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.19 10.47 127.69 1.34 3.53 15 2 N -0.67 -34.08 5.91 -522.49 -3.09 -37.16 15 3 C 0.28 15.20 2.31 43.42 0.10 15.30 15 4 H 0.00 -0.15 7.81 -2.39 -0.02 -0.17 15 5 C -0.53 -30.89 8.75 25.60 0.22 -30.67 15 6 H 0.04 2.37 7.74 -2.91 -0.02 2.34 15 7 C 0.03 1.87 5.39 84.65 0.46 2.32 15 8 N -0.89 -54.13 12.77 21.44 0.27 -53.85 15 9 Si 0.95 45.80 29.54 68.60 2.03 47.83 15 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 15 11 H -0.28 -13.44 7.11 99.48 0.71 -12.74 15 12 H -0.27 -12.90 7.11 99.48 0.71 -12.19 15 13 C -0.18 -8.25 4.81 -19.99 -0.10 -8.34 15 14 C -0.23 -8.83 9.97 22.14 0.22 -8.61 15 15 C -0.01 -0.22 11.94 83.21 0.99 0.77 15 16 N -0.55 -15.39 6.07 -194.56 -1.18 -16.57 15 17 H 0.43 7.98 8.96 -92.71 -0.83 7.15 15 18 C -0.04 -1.61 11.85 83.22 0.99 -0.63 15 19 H 0.00 0.15 8.00 -2.39 -0.02 0.13 15 20 H 0.03 1.65 8.13 -2.39 -0.02 1.63 15 21 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.32 15.24 7.46 -89.69 -0.67 14.57 15 23 H 0.25 14.74 8.31 -92.71 -0.77 13.97 15 24 H 0.12 4.76 7.68 -2.91 -0.02 4.74 15 25 H 0.20 3.93 8.06 -2.91 -0.02 3.90 15 26 H 0.16 5.57 8.06 -2.91 -0.02 5.54 15 Total: -1.00 -69.16 229.43 1.94 -67.22 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -0.32 Total: 18.86 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 4.22 Total: -26.33 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.99 Total: -107.58 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.16 1.94 -67.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259490904.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.345 kcal (2) G-P(sol) polarization free energy of solvation -69.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds