Wall clock time and date at job start Mon Mar 30 2020 02:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34046 * 126.77714 * 2 1 4 4 N 1.20916 * 111.56831 * 179.73191 * 3 2 1 5 5 C 1.30176 * 111.60375 * 0.48272 * 4 3 2 6 6 C 1.50703 * 126.80141 * 179.79750 * 5 4 3 7 7 C 1.50701 * 109.47064 * 269.68655 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47432 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46890 * 120.00210 * 11 9 7 14 14 H 1.48501 * 109.47062 * 240.00257 * 11 9 7 15 15 C 1.35451 * 126.77800 * 180.02562 * 2 1 3 16 16 C 1.50693 * 128.00777 * 0.02562 * 15 2 1 17 17 H 1.09002 * 109.47121 * 269.97158 * 1 2 3 18 18 H 1.08999 * 109.47547 * 29.97379 * 1 2 3 19 19 H 1.08995 * 109.47229 * 149.97687 * 1 2 3 20 20 H 1.09002 * 109.47152 * 149.68748 * 6 5 4 21 21 H 1.09001 * 109.46980 * 29.68849 * 6 5 4 22 22 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 23 23 H 1.09007 * 109.46873 * 269.95748 * 16 15 2 24 24 H 1.08998 * 109.47121 * 29.94897 * 16 15 2 25 25 H 1.09000 * 109.47090 * 149.96051 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0737 0.0000 4 7 3.4763 0.7565 0.0053 5 6 3.6213 -0.5372 -0.0008 6 6 4.9211 -1.2999 -0.0014 7 6 5.3539 -1.5538 -1.4224 8 1 4.7485 -1.1981 -2.2430 9 6 6.5232 -2.2394 -1.6748 10 7 7.2606 -2.6721 -0.6756 11 14 7.0600 -2.5535 -3.4362 12 1 6.0638 -1.9683 -4.3692 13 1 8.3850 -1.9247 -3.6695 14 1 7.1583 -4.0166 -3.6703 15 6 2.3179 -1.0849 -0.0005 16 6 1.9225 -2.5390 -0.0017 17 1 -0.3633 -0.0005 1.0277 18 1 -0.3634 0.8902 -0.5134 19 1 -0.3633 -0.8897 -0.5142 20 1 4.7842 -2.2515 0.5123 21 1 5.6850 -0.7163 0.5124 22 1 8.0830 -3.1547 -0.8532 23 1 1.8275 -2.8905 1.0258 24 1 0.9681 -2.6556 -0.5151 25 1 2.6857 -3.1227 -0.5163 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259616254.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:42 Heat of formation + Delta-G solvation = 16.658877 kcal Electronic energy + Delta-G solvation = -10586.115508 eV Core-core repulsion = 8566.504498 eV Total energy + Delta-G solvation = -2019.611010 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.74967 -36.64090 -35.15004 -34.06643 -30.50285 -29.82751 -27.72510 -25.66511 -22.45168 -20.74436 -18.90278 -18.23265 -17.75857 -16.59960 -15.27022 -14.73248 -14.51303 -14.19784 -13.99369 -13.65826 -13.54425 -13.02258 -12.95842 -12.72247 -12.69905 -12.04730 -11.81381 -11.66447 -10.68460 -10.48768 -9.88164 -8.30109 -6.43399 0.69873 1.34475 1.37183 1.45249 1.52978 2.36378 2.48025 3.01734 3.55914 3.80278 4.07262 4.36776 4.69179 4.75454 4.83344 4.88534 5.01803 5.06954 5.16966 5.20318 5.39916 5.55761 5.61321 6.02503 6.64677 7.25142 7.60261 8.81519 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.061253 B = 0.011008 C = 0.010772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.011056 B = 2542.995374 C = 2598.649500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.046 4.046 3 O 0.083 5.917 4 N -0.416 5.416 5 C 0.026 3.974 6 C 0.098 3.902 7 C -0.533 4.533 8 H 0.047 0.953 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.972 3.028 12 H -0.269 1.269 13 H -0.275 1.275 14 H -0.266 1.266 15 C -0.218 4.218 16 C -0.066 4.066 17 H 0.106 0.894 18 H 0.096 0.904 19 H 0.108 0.892 20 H 0.030 0.970 21 H -0.001 1.001 22 H 0.270 0.730 23 H 0.080 0.920 24 H 0.099 0.901 25 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.043 0.602 0.048 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.110 4.110 3 O 0.020 5.980 4 N -0.123 5.123 5 C -0.131 4.131 6 C 0.061 3.939 7 C -0.572 4.572 8 H 0.065 0.935 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.795 3.205 12 H -0.193 1.193 13 H -0.201 1.201 14 H -0.191 1.191 15 C -0.222 4.222 16 C -0.123 4.123 17 H 0.124 0.876 18 H 0.114 0.886 19 H 0.126 0.874 20 H 0.048 0.952 21 H 0.017 0.983 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.118 0.882 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.051 1.552 0.110 13.144 hybrid contribution 0.714 -0.742 -0.583 1.183 sum -12.337 0.811 -0.473 12.373 Atomic orbital electron populations 1.20524 0.79902 1.05906 1.05464 1.25117 0.97988 0.84885 1.03024 1.84681 1.11128 1.33871 1.68291 1.73744 0.97722 1.17480 1.23405 1.24208 0.99232 0.89855 0.99821 1.17417 0.86147 0.93007 0.97360 1.21178 1.07700 1.36691 0.91595 0.93470 1.25912 0.95882 0.94742 1.02360 1.70066 1.14984 1.38275 1.33163 0.85300 0.78132 0.78530 0.78491 1.19328 1.20097 1.19096 1.21424 0.90725 0.99801 1.10246 1.20105 1.02238 0.86975 1.03006 0.87596 0.88570 0.87380 0.95178 0.98292 0.92138 0.90101 0.88202 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.30 71.23 0.73 -0.33 15 2 C -0.05 -1.51 7.49 25.04 0.19 -1.32 15 3 O 0.08 3.35 11.20 71.59 0.80 4.16 15 4 N -0.42 -20.40 12.07 -49.56 -0.60 -21.00 15 5 C 0.03 1.32 6.52 43.58 0.28 1.60 15 6 C 0.10 5.66 5.48 29.10 0.16 5.82 15 7 C -0.53 -32.02 9.09 25.60 0.23 -31.78 15 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 15 9 C 0.01 0.59 5.46 84.66 0.46 1.05 15 10 N -0.93 -56.34 13.29 21.45 0.28 -56.05 15 11 Si 0.97 45.05 29.54 68.60 2.03 47.08 15 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 13 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 15 C -0.22 -8.51 6.32 -19.74 -0.12 -8.63 15 16 C -0.07 -2.05 10.21 71.23 0.73 -1.32 15 17 H 0.11 1.40 8.14 -2.39 -0.02 1.38 15 18 H 0.10 1.36 8.14 -2.39 -0.02 1.35 15 19 H 0.11 1.46 7.44 -2.39 -0.02 1.44 15 20 H 0.03 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 15 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 23 H 0.08 2.19 8.14 -2.38 -0.02 2.17 15 24 H 0.10 2.23 7.45 -2.39 -0.02 2.22 15 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 Total: -1.00 -71.88 228.07 6.35 -65.52 By element: Atomic # 1 Polarization: -5.96 SS G_CDS: 1.18 Total: -4.79 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 2.66 Total: -34.92 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -0.31 Total: -77.06 kcal Atomic # 8 Polarization: 3.35 SS G_CDS: 0.80 Total: 4.16 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.88 6.35 -65.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259616254.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.183 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds