Wall clock time and date at job start Mon Mar 30 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.39306 * 126.43763 * 265.02540 * 3 2 1 5 5 C 1.39670 * 106.69056 * 179.97438 * 4 3 2 6 6 C 1.39604 * 125.98785 * 180.02562 * 5 4 3 7 7 H 1.07992 * 120.00387 * 359.97438 * 6 5 4 8 8 C 1.39929 * 119.99567 * 180.02562 * 6 5 4 9 9 N 1.31001 * 120.00335 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99746 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47218 * 59.99717 * 10 8 6 12 12 H 1.48503 * 109.47037 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47138 * 299.99603 * 10 8 6 14 14 O 1.35198 * 108.01541 * 359.97438 * 5 4 3 15 15 C 1.34444 * 109.40192 * 359.75234 * 14 5 4 16 16 N 1.37765 * 125.61409 * 180.28209 * 15 14 5 17 17 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 18 18 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 19 19 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 20 20 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 21 21 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 22 22 H 1.07998 * 126.65391 * 359.97438 * 4 3 2 23 23 H 0.97002 * 119.99957 * 180.02562 * 9 8 6 24 24 H 0.96997 * 119.99971 * 180.14655 * 16 15 14 25 25 H 0.97000 * 120.00108 * 0.14493 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3998 2.1685 -1.1165 5 6 2.7989 3.4218 -0.6464 6 6 3.2471 4.4870 -1.4295 7 1 3.3086 4.3801 -2.5024 8 6 3.6175 5.6930 -0.8241 9 7 3.5434 5.8225 0.4773 10 14 4.2166 7.1186 -1.8720 11 1 3.1518 7.5104 -2.8302 12 1 4.5436 8.2730 -0.9969 13 1 5.4301 6.7061 -2.6220 14 8 2.6739 3.4226 0.6998 15 6 2.2084 2.2285 1.1058 16 7 1.9522 1.8689 2.4108 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 0.5139 0.8900 20 1 1.8934 -0.5137 0.8900 21 1 1.8934 -0.5138 -0.8899 22 1 2.3799 1.8424 -2.1459 23 1 3.7999 6.6586 0.8969 24 1 1.6181 0.9809 2.6125 25 1 2.1060 2.5037 3.1280 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259789104.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:14 Heat of formation + Delta-G solvation = -11.333923 kcal Electronic energy + Delta-G solvation = -10673.888096 eV Core-core repulsion = 8653.063228 eV Total energy + Delta-G solvation = -2020.824868 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.19714 -34.37615 -33.29277 -32.50047 -29.73957 -27.68780 -23.88156 -22.48201 -19.81842 -19.03489 -16.61611 -15.84706 -15.48782 -14.76717 -14.17039 -13.67452 -13.30586 -12.71093 -11.84315 -11.49867 -11.22529 -11.16870 -10.93454 -10.60609 -10.43212 -10.14823 -9.82783 -9.60764 -9.12588 -7.80384 -6.66431 -6.30415 -3.98288 3.02192 3.11330 3.14830 3.76964 3.99630 4.20892 4.30378 5.39051 5.70002 5.80786 5.93013 6.16663 6.42136 6.51346 6.67138 6.86460 7.18290 7.26779 7.47002 7.74940 7.99336 8.09007 8.50810 8.76178 8.87900 8.98119 9.51652 10.34810 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.074397 B = 0.011812 C = 0.010543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.270998 B = 2369.889766 C = 2655.053130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.032 4.032 3 C -0.219 4.219 4 C -0.363 4.363 5 C 0.187 3.813 6 C -0.448 4.448 7 H 0.100 0.900 8 C 0.065 3.935 9 N -0.797 5.797 10 Si 0.919 3.081 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.265 1.265 14 O -0.165 6.165 15 C 0.147 3.853 16 N -0.855 5.855 17 H 0.039 0.961 18 H 0.052 0.948 19 H 0.047 0.953 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.108 0.892 23 H 0.279 0.721 24 H 0.402 0.598 25 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -3.805 1.300 4.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.226 4.226 4 C -0.385 4.385 5 C 0.135 3.865 6 C -0.479 4.479 7 H 0.118 0.882 8 C -0.152 4.152 9 N -0.425 5.425 10 Si 0.744 3.256 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.189 1.189 14 O -0.061 6.061 15 C -0.001 4.001 16 N -0.407 5.407 17 H 0.058 0.942 18 H 0.071 0.929 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.126 0.874 23 H 0.090 0.910 24 H 0.232 0.768 25 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.945 -3.359 1.546 4.178 hybrid contribution 0.185 0.528 -0.063 0.563 sum -1.760 -2.831 1.483 3.649 Atomic orbital electron populations 1.21747 0.96906 0.99398 1.01810 1.19561 0.94091 0.93463 0.99878 1.19065 1.15654 0.95972 0.91936 1.20721 1.25356 0.95766 0.96696 1.19203 0.95853 0.94071 0.77339 1.18494 1.40523 0.94573 0.94300 0.88225 1.26012 0.93871 1.00094 0.95271 1.69845 1.36044 1.26578 1.10036 0.86184 0.79925 0.79478 0.80024 1.18940 1.20434 1.18933 1.84324 1.67738 1.29700 1.24319 1.18462 1.08838 0.86982 0.85777 1.40410 1.80152 1.17427 1.02708 0.94221 0.92866 0.93411 0.93810 0.92749 0.87353 0.91043 0.76780 0.78658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 37.16 0.37 -2.02 15 2 C -0.03 -0.62 6.18 -27.88 -0.17 -0.79 15 3 C -0.22 -5.33 5.45 -104.29 -0.57 -5.90 15 4 C -0.36 -9.82 10.85 -38.65 -0.42 -10.24 15 5 C 0.19 5.47 6.78 -38.54 -0.26 5.21 15 6 C -0.45 -12.64 9.30 -38.44 -0.36 -12.99 15 7 H 0.10 2.62 7.84 -52.49 -0.41 2.21 15 8 C 0.06 1.73 5.50 -17.27 -0.09 1.63 15 9 N -0.80 -22.24 11.99 55.55 0.67 -21.57 15 10 Si 0.92 19.48 29.56 -169.99 -5.03 14.45 15 11 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 13 H -0.26 -5.48 7.11 56.52 0.40 -5.08 15 14 O -0.17 -4.81 8.95 2.80 0.03 -4.79 15 15 C 0.15 3.68 8.48 -14.95 -0.13 3.56 15 16 N -0.86 -16.66 9.03 31.03 0.28 -16.38 15 17 H 0.04 0.55 8.14 -51.93 -0.42 0.13 15 18 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.04 0.76 7.82 -51.93 -0.41 0.35 15 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.11 2.77 8.06 -52.49 -0.42 2.35 15 23 H 0.28 7.07 8.30 -40.82 -0.34 6.73 15 24 H 0.40 6.52 8.33 -40.82 -0.34 6.18 15 25 H 0.39 6.96 8.95 -40.82 -0.37 6.59 15 LS Contribution 225.16 15.07 3.39 3.39 Total: -1.00 -30.86 225.16 -5.06 -35.93 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -2.77 Total: 10.51 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -1.63 Total: -21.54 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.95 Total: -37.95 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: 0.03 Total: -4.79 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -30.86 -5.06 -35.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259789104.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.595 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds