Wall clock time and date at job start Mon Mar 30 2020 01:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48497 * 109.46899 * 269.99855 * 3 2 1 5 5 H 1.48503 * 109.46889 * 30.00025 * 3 2 1 6 6 H 1.48495 * 109.46947 * 150.00133 * 3 2 1 7 7 C 1.37883 * 119.99525 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99221 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00368 * 0.27264 * 7 2 1 10 10 C 1.52996 * 115.55173 * 179.83744 * 9 7 2 11 11 C 1.54895 * 110.75309 * 56.63466 * 10 9 7 12 12 C 1.54265 * 104.19513 * 203.74114 * 11 10 9 13 13 C 1.53875 * 106.59962 * 23.61252 * 12 11 10 14 14 C 1.54270 * 106.59838 * 0.02562 * 13 12 11 15 15 C 1.52998 * 117.49646 * 34.13118 * 9 7 2 16 16 C 1.52995 * 60.00005 * 252.51317 * 15 9 7 17 17 H 0.96993 * 119.99658 * 0.02562 * 1 2 3 18 18 H 1.08997 * 110.67283 * 180.02562 * 10 9 7 19 19 H 1.08996 * 110.49196 * 322.42305 * 11 10 9 20 20 H 1.09006 * 110.48416 * 85.06664 * 11 10 9 21 21 H 1.08997 * 110.03444 * 264.32765 * 12 11 10 22 22 H 1.09002 * 110.03288 * 142.89504 * 12 11 10 23 23 H 1.08998 * 110.03390 * 240.71220 * 13 12 11 24 24 H 1.08997 * 110.03471 * 119.28258 * 13 12 11 25 25 H 1.09000 * 110.48250 * 217.71223 * 14 13 12 26 26 H 1.08998 * 110.60005 * 95.12060 * 14 13 12 27 27 H 1.09001 * 117.50224 * 359.97438 * 15 9 7 28 28 H 1.09001 * 117.49665 * 145.01923 * 15 9 7 29 29 H 1.09006 * 117.49716 * 252.51257 * 16 15 9 30 30 H 1.09000 * 117.52240 * 107.48496 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0073 10 6 2.1164 -3.7609 -0.0112 11 6 3.0818 -3.7680 1.2001 12 6 4.2376 -4.6888 0.7572 13 6 4.2396 -4.6827 -0.7815 14 6 3.0853 -3.7580 -1.2201 15 6 -0.0719 -2.5471 -0.7744 16 6 -0.0741 -2.5538 0.7555 17 1 -0.4849 0.8400 -0.0004 18 1 1.4931 -4.6550 -0.0165 19 1 3.4506 -2.7620 1.4000 20 1 2.5855 -4.1755 2.0809 21 1 4.0712 -5.7008 1.1264 22 1 5.1859 -4.3048 1.1333 23 1 4.0742 -5.6918 -1.1591 24 1 5.1888 -4.2959 -1.1522 25 1 2.5912 -4.1583 -2.1054 26 1 3.4532 -2.7502 -1.4125 27 1 -0.3975 -1.6346 -1.2738 28 1 -0.3259 -3.4776 -1.2822 29 1 -0.3295 -3.4887 1.2544 30 1 -0.4007 -1.6459 1.2627 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827494.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:25 Heat of formation + Delta-G solvation = -6.263708 kcal Electronic energy + Delta-G solvation = -11160.883422 eV Core-core repulsion = 9341.537420 eV Total energy + Delta-G solvation = -1819.346002 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.66147 -36.91508 -33.52914 -29.42387 -29.34101 -27.39807 -22.65004 -22.29931 -20.74242 -20.55926 -17.69810 -17.08315 -16.35294 -15.72075 -14.90208 -14.43588 -13.99721 -13.48454 -12.97921 -12.78844 -12.42627 -12.29249 -12.14367 -11.92346 -11.91287 -11.73856 -11.54670 -11.09398 -10.90606 -10.62679 -10.13693 -9.89707 -7.97843 -6.08666 1.41417 1.43007 1.52387 2.43924 3.07110 3.78787 3.99586 4.06438 4.23106 4.59310 4.69784 4.76561 4.84505 4.91884 4.97786 5.04597 5.13641 5.23748 5.25960 5.33137 5.38276 5.44971 5.61358 5.64427 5.68684 5.73354 6.08444 6.22575 6.51364 6.96416 7.48361 8.96316 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.043730 B = 0.015641 C = 0.013155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.141608 B = 1789.705523 C = 2127.887303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.481 4.481 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.050 4.050 11 C -0.112 4.112 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.112 4.112 15 C -0.195 4.195 16 C -0.195 4.195 17 H 0.255 0.745 18 H 0.055 0.945 19 H 0.053 0.947 20 H 0.054 0.946 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 -6.681 -0.023 9.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.023 3.977 10 C -0.069 4.069 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.233 4.233 16 C -0.233 4.233 17 H 0.065 0.935 18 H 0.073 0.927 19 H 0.072 0.928 20 H 0.073 0.927 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.358 -6.548 -0.018 9.127 hybrid contribution -0.256 1.199 -0.014 1.226 sum 6.103 -5.349 -0.032 8.115 Atomic orbital electron populations 1.70197 1.06951 1.26224 1.50960 1.25773 0.95734 1.02308 0.95336 0.85619 0.78763 0.79627 0.78016 1.20420 1.21382 1.19162 1.20894 0.92764 0.89959 1.48213 0.92072 1.19141 0.85805 0.93640 0.99139 1.21560 0.95235 0.94514 0.95557 1.22280 0.96054 0.99517 0.97077 1.22124 0.98071 0.99587 0.95747 1.22122 0.98085 0.99561 0.95745 1.22287 0.96058 0.99528 0.97078 1.22668 1.07433 0.99018 0.94182 1.22663 1.07386 0.98963 0.94251 0.93545 0.92661 0.92826 0.92736 0.90910 0.91499 0.90906 0.91487 0.92759 0.92793 0.90354 0.92352 0.92351 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.01 8.59 21.45 0.18 -51.82 16 2 C 0.01 0.38 5.28 84.66 0.45 0.82 16 3 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.48 -26.08 7.51 25.60 0.19 -25.88 16 8 H 0.06 3.25 6.65 -2.91 -0.02 3.23 16 9 C 0.02 1.16 1.78 -52.93 -0.09 1.06 16 10 C -0.05 -2.05 2.79 -9.49 -0.03 -2.08 16 11 C -0.11 -4.11 6.22 31.67 0.20 -3.91 16 12 C -0.12 -3.36 6.80 31.32 0.21 -3.15 16 13 C -0.12 -3.35 6.80 31.32 0.21 -3.14 16 14 C -0.11 -4.11 6.22 31.68 0.20 -3.91 16 15 C -0.20 -10.07 9.38 30.59 0.29 -9.78 16 16 C -0.19 -10.04 9.38 30.59 0.29 -9.76 16 17 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 18 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 19 H 0.05 2.22 6.72 -2.39 -0.02 2.20 16 20 H 0.05 1.91 8.14 -2.38 -0.02 1.90 16 21 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 26 H 0.05 2.22 6.72 -2.39 -0.02 2.21 16 27 H 0.08 4.50 6.28 -2.39 -0.01 4.49 16 28 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 30 H 0.08 4.49 6.29 -2.39 -0.02 4.48 16 Total: -1.00 -58.12 235.84 5.22 -52.90 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.09 Total: 12.91 kcal Atomic # 6 Polarization: -61.63 SS G_CDS: 1.91 Total: -59.72 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.18 Total: -51.82 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -58.12 5.22 -52.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827494.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.640 kcal (2) G-P(sol) polarization free energy of solvation -58.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds