Wall clock time and date at job start Mon Mar 30 2020 01:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30505 * 1 3 3 Si 1.86805 * 119.99900 * 2 1 4 4 H 1.48496 * 109.47033 * 274.39052 * 3 2 1 5 5 H 1.48496 * 109.47357 * 34.39513 * 3 2 1 6 6 H 1.48503 * 109.46870 * 154.39241 * 3 2 1 7 7 C 1.40592 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00475 * 188.68508 * 7 2 1 9 9 C 1.39227 * 119.99632 * 8.67512 * 7 2 1 10 10 N 1.37559 * 126.45884 * 5.49601 * 9 7 2 11 11 H 0.96998 * 125.50402 * 0.03456 * 10 9 7 12 12 C 1.36122 * 108.98644 * 180.02562 * 10 9 7 13 13 C 1.35565 * 109.54905 * 359.97438 * 12 10 9 14 14 C 1.40889 * 107.88800 * 0.02562 * 13 12 10 15 15 C 1.46816 * 126.75168 * 179.73562 * 14 13 12 16 16 O 1.21602 * 119.99817 * 180.02562 * 15 14 13 17 17 O 1.34886 * 120.00520 * 0.02562 * 15 14 13 18 18 H 0.97003 * 119.99978 * 359.97438 * 1 2 3 19 19 H 1.07997 * 125.22790 * 180.02562 * 12 10 9 20 20 H 1.08005 * 126.05600 * 180.02562 * 13 12 10 21 21 H 0.96694 * 117.00350 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 2.3937 2.1000 -1.3959 5 1 1.4861 2.6241 0.7909 6 1 3.5800 1.4152 0.6051 7 6 2.0081 -1.2175 -0.0005 8 1 3.0788 -1.2230 0.1407 9 6 1.3238 -2.4163 -0.1830 10 7 -0.0123 -2.5582 -0.4776 11 1 -0.6436 -1.8312 -0.5951 12 6 -0.3053 -3.8837 -0.5779 13 6 0.8148 -4.6141 -0.3548 14 6 1.8719 -3.7182 -0.0999 15 6 3.2663 -4.0671 0.1990 16 8 4.0829 -3.1890 0.4009 17 8 3.6417 -5.3617 0.2496 18 1 -0.4850 0.8401 0.0004 19 1 -1.2802 -4.2910 -0.8016 20 1 0.8845 -5.6917 -0.3699 21 1 4.5704 -5.5420 0.4496 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259836214.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:59 Heat of formation + Delta-G solvation = -74.247186 kcal Electronic energy + Delta-G solvation = -10473.783975 eV Core-core repulsion = 8314.397889 eV Total energy + Delta-G solvation = -2159.386087 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.34602 -38.02376 -34.61672 -33.75841 -29.51805 -28.87053 -25.04287 -22.34645 -19.47144 -18.66608 -17.96994 -16.52752 -15.57687 -14.73510 -14.14918 -13.92310 -12.77817 -12.40185 -12.27364 -12.08771 -11.43902 -11.34580 -11.02082 -10.36436 -10.30362 -10.12498 -9.56112 -8.99232 -7.47996 -7.22630 -7.13089 -4.52010 2.74576 2.99601 3.08799 3.23414 3.80421 3.81329 4.46887 4.58634 5.22394 5.33359 6.40335 6.71138 6.85036 7.06760 7.40643 7.44493 7.74654 7.84265 8.14391 8.52825 8.59257 8.93628 9.41917 9.53179 9.88804 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.045877 B = 0.016706 C = 0.012346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.179422 B = 1675.618567 C = 2267.417791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.068 3.932 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.425 4.425 8 H 0.118 0.882 9 C 0.304 3.696 10 N -0.573 5.573 11 H 0.421 0.579 12 C -0.098 4.098 13 C -0.141 4.141 14 C -0.360 4.360 15 C 0.543 3.457 16 O -0.563 6.563 17 O -0.534 6.534 18 H 0.291 0.709 19 H 0.135 0.865 20 H 0.114 0.886 21 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -0.920 -0.738 1.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.149 4.149 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.178 1.178 7 C -0.458 4.458 8 H 0.136 0.864 9 C 0.187 3.813 10 N -0.182 5.182 11 H 0.266 0.734 12 C -0.222 4.222 13 C -0.166 4.166 14 C -0.366 4.366 15 C 0.397 3.603 16 O -0.459 6.459 17 O -0.345 6.345 18 H 0.102 0.898 19 H 0.152 0.848 20 H 0.132 0.868 21 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.656 -0.450 -0.807 1.133 hybrid contribution 0.457 0.752 0.081 0.884 sum -0.199 0.302 -0.726 0.811 Atomic orbital electron populations 1.68906 1.08198 1.30688 1.37722 1.26304 0.94839 1.02727 0.91011 0.85834 0.80627 0.78444 0.79298 1.19142 1.20079 1.17794 1.19498 0.97748 0.88022 1.40554 0.86379 1.17817 0.81721 0.92162 0.89649 1.42465 1.09769 1.06628 1.59340 0.73396 1.21251 0.98551 0.84524 1.17881 1.20401 0.92467 0.96933 1.06844 1.17991 0.90231 0.93110 1.35222 1.20071 0.88622 0.78290 0.73287 1.90719 1.54345 1.49035 1.51786 1.84672 1.33354 1.30960 1.85484 0.89755 0.84767 0.86824 0.75860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.80 10.81 55.58 0.60 -19.19 14 2 C 0.07 1.67 5.49 -17.23 -0.09 1.58 14 3 Si 0.93 18.72 29.57 -169.99 -5.03 13.70 14 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 14 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 14 6 H -0.25 -5.22 7.11 56.52 0.40 -4.82 14 7 C -0.42 -11.64 8.92 -38.33 -0.34 -11.98 14 8 H 0.12 3.36 6.13 -52.48 -0.32 3.04 14 9 C 0.30 8.40 6.70 -83.69 -0.56 7.84 14 10 N -0.57 -14.38 5.72 -10.31 -0.06 -14.44 14 11 H 0.42 10.17 6.44 -40.82 -0.26 9.91 14 12 C -0.10 -2.26 11.87 -16.60 -0.20 -2.45 14 13 C -0.14 -3.39 10.64 -39.53 -0.42 -3.81 14 14 C -0.36 -9.68 6.22 -104.18 -0.65 -10.33 14 15 C 0.54 13.90 8.32 34.20 0.28 14.18 14 16 O -0.56 -15.49 15.72 -19.34 -0.30 -15.79 14 17 O -0.53 -11.09 13.29 -41.00 -0.54 -11.64 14 18 H 0.29 6.26 8.29 -40.82 -0.34 5.92 14 19 H 0.13 2.55 8.06 -52.49 -0.42 2.13 14 20 H 0.11 2.45 8.06 -52.48 -0.42 2.03 14 21 H 0.39 5.88 9.11 45.56 0.42 6.29 14 LS Contribution 200.67 15.07 3.02 3.02 Total: -1.00 -30.09 200.67 -4.44 -34.52 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -0.15 Total: 14.79 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.98 Total: -4.98 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.54 Total: -33.63 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.85 Total: -27.43 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -30.09 -4.44 -34.52 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259836214.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.723 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds