Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86800 * 119.99765 * 2 1 4 4 H 1.48498 * 109.46928 * 274.97843 * 3 2 1 5 5 H 1.48503 * 109.47313 * 34.97911 * 3 2 1 6 6 H 1.48500 * 109.47179 * 154.97952 * 3 2 1 7 7 C 1.40033 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99668 * 185.97578 * 7 2 1 9 9 C 1.41561 * 119.99952 * 5.97735 * 7 2 1 10 10 N 1.32379 * 127.49325 * 354.38716 * 9 7 2 11 11 O 1.20913 * 111.40682 * 180.02562 * 10 9 7 12 12 C 1.33781 * 113.08005 * 0.26916 * 11 10 9 13 13 C 1.35292 * 107.39319 * 359.51855 * 12 11 10 14 14 O 1.35481 * 112.57101 * 180.79037 * 13 12 11 15 15 C 1.44032 * 108.87089 * 341.51279 * 14 13 12 16 16 C 1.51485 * 145.48620 * 178.98191 * 12 11 10 17 17 H 0.96998 * 120.00426 * 0.02562 * 1 2 3 18 18 H 1.08999 * 110.85012 * 268.36340 * 15 14 13 19 19 H 1.09000 * 111.02792 * 144.82008 * 15 14 13 20 20 H 1.09004 * 110.92907 * 313.61935 * 16 12 11 21 21 H 1.09000 * 110.93520 * 77.28557 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4953 2.6201 0.8026 6 1 3.5876 1.4122 0.5921 7 6 2.0076 -1.2127 0.0005 8 1 3.0832 -1.2152 0.0979 9 6 1.3055 -2.4354 -0.1266 10 7 -0.0061 -2.6126 -0.1514 11 8 -0.2914 -3.7815 -0.2704 12 6 0.7808 -4.5787 -0.3389 13 6 1.8770 -3.7896 -0.2605 14 8 3.0315 -4.4944 -0.3374 15 6 2.7536 -5.8772 -0.0456 16 6 1.2679 -6.0079 -0.4607 17 1 -0.4851 0.8400 -0.0004 18 1 2.8789 -6.0821 1.0176 19 1 3.3828 -6.5371 -0.6429 20 1 0.7285 -6.6627 0.2237 21 1 1.1802 -6.3630 -1.4875 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259848390.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = 18.915211 kcal Electronic energy + Delta-G solvation = -10595.402064 eV Core-core repulsion = 8440.055802 eV Total energy + Delta-G solvation = -2155.346262 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.72067 -40.65454 -35.96396 -33.05271 -32.85726 -30.11950 -28.30471 -24.50687 -22.70789 -22.10336 -19.05755 -18.31305 -17.97549 -17.07852 -16.42719 -16.38704 -15.14623 -14.65280 -13.98639 -13.57455 -13.10680 -12.90623 -12.72424 -12.32362 -12.19840 -11.86022 -11.57883 -11.20304 -10.20636 -9.15437 -8.62407 -6.66334 1.03364 1.30023 1.36805 1.54346 1.76664 1.95503 2.20850 2.94011 3.16575 3.67602 4.17453 4.22267 4.44252 4.53379 4.80481 4.86011 4.94287 5.05038 5.25937 6.05068 6.20334 6.50641 6.76382 8.35328 8.45718 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.075175 B = 0.013494 C = 0.011567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.373932 B = 2074.532277 C = 2420.161559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.021 3.979 3 Si 1.005 2.995 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.253 1.253 7 C -0.478 4.478 8 H 0.090 0.910 9 C 0.154 3.846 10 N -0.426 5.426 11 O 0.045 5.955 12 C -0.173 4.173 13 C -0.112 4.112 14 O -0.307 6.307 15 C 0.049 3.951 16 C -0.037 4.037 17 H 0.287 0.713 18 H 0.086 0.914 19 H 0.148 0.852 20 H 0.122 0.878 21 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 -7.608 -0.260 8.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.176 1.176 7 C -0.516 4.516 8 H 0.108 0.892 9 C 0.007 3.993 10 N -0.158 5.158 11 O 0.000 6.000 12 C -0.236 4.236 13 C -0.160 4.160 14 O -0.222 6.222 15 C -0.025 4.025 16 C -0.075 4.075 17 H 0.097 0.903 18 H 0.104 0.896 19 H 0.166 0.834 20 H 0.141 0.859 21 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.508 -6.838 -0.242 7.690 hybrid contribution 0.704 0.417 0.028 0.818 sum 4.212 -6.422 -0.214 7.683 Atomic orbital electron populations 1.69961 1.09193 1.30371 1.34627 1.27006 0.95818 1.04919 0.91776 0.84873 0.78772 0.74540 0.79500 1.18496 1.18800 1.17614 1.19114 0.94914 0.88829 1.48783 0.89237 1.21259 0.88025 0.91391 0.98627 1.75116 1.14001 0.92373 1.34274 1.84270 1.31090 1.12341 1.72298 1.25669 0.88013 0.99346 1.10555 1.21865 0.87087 0.94248 1.12821 1.86493 1.27499 1.21166 1.87065 1.24467 0.94887 0.79992 1.03184 1.21506 0.94762 0.85617 1.05635 0.90323 0.89582 0.83389 0.85936 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.04 12.07 21.84 0.26 -47.77 14 2 C 0.02 1.18 5.49 85.29 0.47 1.65 14 3 Si 1.00 41.14 29.56 68.60 2.03 43.17 14 4 H -0.26 -10.19 7.11 99.48 0.71 -9.48 14 5 H -0.26 -10.13 7.11 99.48 0.71 -9.43 14 6 H -0.25 -9.87 7.11 99.48 0.71 -9.16 14 7 C -0.48 -28.81 9.47 23.53 0.22 -28.59 14 8 H 0.09 5.12 7.85 -2.91 -0.02 5.10 14 9 C 0.15 9.51 7.00 42.35 0.30 9.81 14 10 N -0.43 -26.63 10.52 -48.47 -0.51 -27.14 14 11 O 0.05 2.50 11.09 74.06 0.82 3.32 14 12 C -0.17 -8.07 8.54 25.26 0.22 -7.86 14 13 C -0.11 -5.90 8.21 24.06 0.20 -5.71 14 14 O -0.31 -13.58 11.12 -87.80 -0.98 -14.55 14 15 C 0.05 1.36 8.07 72.60 0.59 1.94 14 16 C -0.04 -1.08 7.11 30.72 0.22 -0.86 14 17 H 0.29 15.16 8.29 -92.71 -0.77 14.39 14 18 H 0.09 2.10 8.14 -2.39 -0.02 2.08 14 19 H 0.15 2.68 8.14 -2.39 -0.02 2.66 14 20 H 0.12 2.69 8.14 -2.38 -0.02 2.67 14 21 H 0.12 2.74 8.14 -2.39 -0.02 2.72 14 Total: -1.00 -76.12 198.29 5.08 -71.04 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: 1.25 Total: 1.54 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.21 Total: -29.61 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -0.25 Total: -74.91 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.15 Total: -11.23 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -76.12 5.08 -71.04 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848390.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.950 kcal (2) G-P(sol) polarization free energy of solvation -76.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds