Wall clock time and date at job start Mon Mar 30 2020 01:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48495 * 109.47121 * 90.00241 * 3 2 1 5 5 H 1.48500 * 109.46665 * 209.99785 * 3 2 1 6 6 H 1.48494 * 109.47169 * 329.99672 * 3 2 1 7 7 C 1.37879 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00150 * 341.67616 * 7 2 1 9 9 C 1.50698 * 119.99693 * 161.67425 * 7 2 1 10 10 H 1.08999 * 109.56699 * 55.52674 * 9 7 2 11 11 C 1.53183 * 109.57280 * 295.28173 * 9 7 2 12 12 C 1.52945 * 109.44657 * 183.60692 * 11 9 7 13 13 C 1.52933 * 109.82463 * 62.98828 * 12 11 9 14 14 C 1.53179 * 109.45208 * 297.01316 * 13 12 11 15 15 C 1.53153 * 108.87976 * 56.57050 * 14 13 12 16 16 C 1.52846 * 117.68514 * 91.49356 * 15 14 13 17 17 C 1.52808 * 117.74803 * 160.37816 * 15 14 13 18 18 H 0.97003 * 119.99854 * 174.89854 * 1 2 3 19 19 H 1.09004 * 109.47108 * 303.59991 * 11 9 7 20 20 H 1.09001 * 109.46883 * 63.60675 * 11 9 7 21 21 H 1.09003 * 109.40733 * 183.09353 * 12 11 9 22 22 H 1.08994 * 109.41257 * 302.94633 * 12 11 9 23 23 H 1.09000 * 109.47428 * 57.00950 * 13 12 11 24 24 H 1.09004 * 109.47557 * 177.01581 * 13 12 11 25 25 H 1.09006 * 109.56808 * 176.38668 * 14 13 12 26 26 H 1.08996 * 109.56793 * 296.74570 * 14 13 12 27 27 H 1.08997 * 117.50272 * 215.21751 * 16 15 14 28 28 H 1.09000 * 117.49758 * 0.27443 * 16 15 14 29 29 H 1.08997 * 117.50182 * 359.84264 * 17 15 14 30 30 H 1.08999 * 117.50205 * 144.85886 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.5056 -2.1056 0.2950 9 6 3.4542 -1.2274 -0.4098 10 1 4.0232 -0.5280 0.2028 11 6 3.5790 -0.8358 -1.8855 12 6 5.0395 -0.9573 -2.3228 13 6 5.4953 -2.4128 -2.2101 14 6 5.4322 -2.8551 -0.7449 15 6 4.0075 -2.6434 -0.2243 16 6 3.0272 -3.8100 -0.3436 17 6 3.5849 -3.4143 1.0255 18 1 -0.4850 -0.8368 -0.0747 19 1 2.9618 -1.4997 -2.4910 20 1 3.2441 0.1930 -2.0180 21 1 5.1367 -0.6263 -3.3568 22 1 5.6625 -0.3330 -1.6825 23 1 4.8411 -3.0459 -2.8094 24 1 6.5194 -2.5020 -2.5729 25 1 5.6951 -3.9103 -0.6705 26 1 6.1290 -2.2609 -0.1539 27 1 1.9839 -3.5716 -0.5502 28 1 3.3960 -4.7337 -0.7894 29 1 4.3203 -4.0779 1.4803 30 1 2.9086 -2.9157 1.7198 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259877439.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:15 Heat of formation + Delta-G solvation = -16.469779 kcal Electronic energy + Delta-G solvation = -11323.148577 eV Core-core repulsion = 9503.360006 eV Total energy + Delta-G solvation = -1819.788570 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.29838 -35.55845 -34.93505 -31.86961 -28.57855 -25.85885 -23.28077 -22.94860 -21.61740 -19.73426 -18.96742 -16.72519 -16.11987 -15.35565 -15.11586 -14.55081 -14.24202 -13.93108 -13.48648 -13.01178 -12.80369 -12.39225 -12.23964 -12.06776 -11.79918 -11.61016 -11.50674 -11.07764 -10.77977 -10.59255 -10.22879 -10.10977 -8.64749 -6.24337 1.47768 1.52308 1.71122 2.53951 3.05201 3.16030 3.92474 4.07056 4.13251 4.26674 4.41779 4.46863 4.65601 4.72622 4.84426 4.86126 4.94346 5.11487 5.13579 5.25736 5.29291 5.35011 5.41441 5.50484 5.57378 5.68328 5.85270 6.12933 6.27395 6.69666 7.49888 8.71061 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.042157 B = 0.018886 C = 0.014973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.019996 B = 1482.204589 C = 1869.616268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.024 4.024 3 Si 1.077 2.923 4 H -0.279 1.279 5 H -0.236 1.236 6 H -0.293 1.293 7 C -0.590 4.590 8 H 0.033 0.967 9 C 0.050 3.950 10 H 0.020 0.980 11 C -0.112 4.112 12 C -0.118 4.118 13 C -0.107 4.107 14 C -0.076 4.076 15 C -0.108 4.108 16 C -0.175 4.175 17 C -0.173 4.173 18 H 0.250 0.750 19 H 0.033 0.967 20 H 0.038 0.962 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.911 -3.801 -3.185 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.221 4.221 3 Si 0.899 3.101 4 H -0.206 1.206 5 H -0.160 1.160 6 H -0.219 1.219 7 C -0.628 4.628 8 H 0.051 0.949 9 C 0.031 3.969 10 H 0.038 0.962 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.113 4.113 15 C -0.108 4.108 16 C -0.212 4.212 17 C -0.210 4.210 18 H 0.058 0.942 19 H 0.052 0.948 20 H 0.057 0.943 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.725 -2.183 -3.124 13.283 hybrid contribution -1.001 -1.733 0.209 2.013 sum 11.723 -3.916 -2.915 12.699 Atomic orbital electron populations 1.70951 1.08570 1.29279 1.49744 1.27057 0.96013 1.06192 0.92857 0.83707 0.76365 0.72138 0.77867 1.20552 1.15981 1.21915 1.22443 0.97396 0.95171 1.47801 0.94870 1.18579 0.93673 0.91835 0.92788 0.96206 1.21839 0.96170 0.99129 0.97859 1.21552 0.95504 0.97578 1.00902 1.21460 1.01408 0.95608 0.96004 1.21179 0.92622 1.01243 0.96290 1.21571 0.95438 0.93220 1.00597 1.22841 0.98587 0.98816 1.00913 1.22826 1.03512 1.03744 0.90942 0.94160 0.94799 0.94308 0.91460 0.92086 0.92870 0.89731 0.90815 0.91246 0.92008 0.88071 0.87441 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.98 13.70 21.45 0.29 -60.69 16 2 C -0.02 -1.44 5.33 84.65 0.45 -0.99 16 3 Si 1.08 51.27 26.34 68.60 1.81 53.07 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.24 -9.88 5.52 99.48 0.55 -9.33 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.59 -33.47 7.52 25.60 0.19 -33.28 16 8 H 0.03 2.05 5.38 -2.91 -0.02 2.04 16 9 C 0.05 2.34 1.76 -11.43 -0.02 2.32 16 10 H 0.02 0.94 6.74 -2.39 -0.02 0.92 16 11 C -0.11 -4.76 4.66 30.64 0.14 -4.62 16 12 C -0.12 -3.78 5.82 30.55 0.18 -3.60 16 13 C -0.11 -2.99 5.93 30.63 0.18 -2.81 16 14 C -0.08 -2.27 5.67 30.71 0.17 -2.09 16 15 C -0.11 -4.25 1.97 -52.19 -0.10 -4.35 16 16 C -0.17 -6.93 9.39 30.55 0.29 -6.64 16 17 C -0.17 -6.70 9.49 30.54 0.29 -6.41 16 18 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 19 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 20 H 0.04 1.71 5.10 -2.39 -0.01 1.70 16 21 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 1.88 8.09 -2.38 -0.02 1.86 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 2.93 6.26 -2.39 -0.01 2.92 16 28 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.06 2.91 7.25 -2.39 -0.02 2.90 16 Total: -1.00 -64.65 230.00 4.78 -59.87 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.90 Total: 10.23 kcal Atomic # 6 Polarization: -64.26 SS G_CDS: 1.77 Total: -62.48 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: 0.29 Total: -60.69 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 1.81 Total: 53.07 kcal Total: -64.65 4.78 -59.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877439.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.402 kcal (2) G-P(sol) polarization free energy of solvation -64.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds