Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31531 * 1 3 3 Si 1.86795 * 119.99971 * 2 1 4 4 H 1.48501 * 109.46781 * 270.26941 * 3 2 1 5 5 H 1.48495 * 109.47449 * 30.27051 * 3 2 1 6 6 H 1.48498 * 109.47513 * 150.27379 * 3 2 1 7 7 C 1.38685 * 119.99925 * 180.26760 * 2 1 3 8 8 H 1.08000 * 119.99572 * 359.72875 * 7 2 1 9 9 O 1.34872 * 120.00036 * 179.72669 * 7 2 1 10 10 C 1.35474 * 116.99832 * 179.97438 * 9 7 2 11 11 C 1.39001 * 120.47132 * 180.02562 * 10 9 7 12 12 C 1.39276 * 118.27360 * 179.97438 * 11 10 9 13 13 N 1.38606 * 120.49397 * 180.02562 * 12 11 10 14 14 N 1.33133 * 119.00579 * 359.97438 * 12 11 10 15 15 C 1.31750 * 120.85266 * 0.02562 * 14 12 11 16 16 N 1.31736 * 121.90778 * 359.72867 * 15 14 12 17 17 H 0.97000 * 119.99633 * 359.73345 * 1 2 3 18 18 H 1.08005 * 120.86037 * 359.95694 * 11 10 9 19 19 H 0.96999 * 120.00321 * 359.97438 * 13 12 11 20 20 H 0.96998 * 119.99602 * 180.02562 * 13 12 11 21 21 H 1.08001 * 119.04463 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4910 2.0496 -1.4001 5 1 1.4497 2.6510 0.7057 6 1 3.5497 1.4386 0.6942 7 6 2.0087 -1.2010 -0.0056 8 1 1.4686 -2.1363 -0.0055 9 8 3.3574 -1.2010 -0.0112 10 6 3.9724 -2.4081 -0.0159 11 6 5.3599 -2.4924 -0.0213 12 6 5.9440 -3.7567 -0.0255 13 7 7.3233 -3.8942 -0.0304 14 7 5.1579 -4.8311 -0.0237 15 6 3.8461 -4.7084 -0.0186 16 7 3.2570 -3.5302 -0.0097 17 1 -0.4849 0.8401 0.0039 18 1 5.9690 -1.6005 -0.0224 19 1 7.8893 -3.1064 -0.0312 20 1 7.7225 -4.7782 -0.0337 21 1 3.2362 -5.5997 -0.0169 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259897238.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = -3.864586 kcal Electronic energy + Delta-G solvation = -10267.311399 eV Core-core repulsion = 8143.270082 eV Total energy + Delta-G solvation = -2124.041317 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.75829 -39.42276 -36.16403 -34.54885 -32.76692 -31.17028 -27.38472 -25.11463 -23.72264 -20.49946 -19.53042 -18.48681 -17.34859 -16.49073 -16.31062 -16.03414 -15.87914 -15.08151 -14.68878 -14.41685 -14.28252 -12.86419 -12.43910 -12.35666 -11.91757 -11.35516 -11.04901 -10.15837 -10.06691 -9.27021 -8.49873 -6.26661 0.31191 0.65520 1.31292 1.37175 1.51150 2.26501 2.40036 2.81585 2.85348 3.21690 3.53603 3.98404 4.28445 4.61190 4.76069 5.29245 5.82642 5.92824 6.07112 6.37805 6.76978 7.00268 7.37305 7.59252 8.61955 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.071777 B = 0.012135 C = 0.010418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.003993 B = 2306.862020 C = 2687.022778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.085 0.915 9 O -0.219 6.219 10 C 0.355 3.645 11 C -0.352 4.352 12 C 0.457 3.543 13 N -0.815 5.815 14 N -0.620 5.620 15 C 0.362 3.638 16 N -0.636 5.636 17 H 0.286 0.714 18 H 0.152 0.848 19 H 0.422 0.578 20 H 0.416 0.584 21 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.428 -4.032 -0.048 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.103 0.897 9 O -0.115 6.115 10 C 0.172 3.828 11 C -0.381 4.381 12 C 0.213 3.787 13 N -0.361 5.361 14 N -0.353 5.353 15 C 0.072 3.928 16 N -0.373 5.373 17 H 0.096 0.904 18 H 0.169 0.831 19 H 0.255 0.745 20 H 0.248 0.752 21 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 12.786 -4.245 -0.039 13.472 hybrid contribution 0.422 1.173 -0.014 1.247 sum 13.208 -3.072 -0.053 13.561 Atomic orbital electron populations 1.69727 1.07058 1.29740 1.49274 1.25375 0.95970 1.02193 0.95335 0.85211 0.78872 0.77090 0.79476 1.18825 1.18910 1.18319 1.20686 0.77218 0.96681 1.52322 0.89688 1.83661 1.22682 1.24747 1.80431 1.20181 0.89710 0.85031 0.87835 1.20846 0.91927 0.99507 1.25841 1.18214 0.87456 0.87655 0.85377 1.41916 1.00129 1.13120 1.80972 1.68026 1.06584 1.31899 1.28804 1.24922 0.87686 0.94271 0.85872 1.68142 1.42594 0.99630 1.26930 0.90378 0.83065 0.74489 0.75221 0.76275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.69 13.96 21.62 0.30 -55.39 14 2 C 0.01 0.61 5.49 84.84 0.47 1.08 14 3 Si 0.97 44.87 28.62 68.60 1.96 46.83 14 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 14 5 H -0.26 -11.37 7.11 99.48 0.71 -10.66 14 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 14 7 C -0.39 -23.93 10.11 67.93 0.69 -23.24 14 8 H 0.09 5.66 6.97 -2.91 -0.02 5.64 14 9 O -0.22 -12.12 8.59 -20.14 -0.17 -12.30 14 10 C 0.35 17.32 7.47 84.69 0.63 17.95 14 11 C -0.35 -13.50 9.99 22.70 0.23 -13.27 14 12 C 0.46 14.75 7.82 133.01 1.04 15.79 14 13 N -0.82 -16.51 9.06 -55.19 -0.50 -17.01 14 14 N -0.62 -21.35 10.47 -197.78 -2.07 -23.42 14 15 C 0.36 13.60 12.28 180.91 2.22 15.82 14 16 N -0.64 -30.38 8.81 -313.00 -2.76 -33.13 14 17 H 0.29 15.78 8.31 -92.71 -0.77 15.01 14 18 H 0.15 5.03 8.06 -2.91 -0.02 5.01 14 19 H 0.42 6.16 8.84 -92.71 -0.82 5.34 14 20 H 0.42 6.68 8.95 -92.71 -0.83 5.85 14 21 H 0.22 6.33 8.06 -2.91 -0.02 6.31 14 Total: -1.00 -71.43 203.18 1.67 -69.76 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -0.37 Total: 10.53 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 5.27 Total: 14.13 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.03 Total: -128.95 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.17 Total: -12.30 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.96 Total: 46.83 kcal Total: -71.43 1.67 -69.76 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897238.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.894 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds