Wall clock time and date at job start Mon Mar 30 2020 01:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31203 * 1 3 3 Si 1.86805 * 119.99475 * 2 1 4 4 H 1.48504 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47065 * 299.99954 * 3 2 1 6 6 H 1.48494 * 109.47145 * 60.00215 * 3 2 1 7 7 C 1.39145 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99620 * 198.18579 * 7 2 1 9 9 N 1.36887 * 120.00220 * 18.18647 * 7 2 1 10 10 C 1.36076 * 119.30121 * 28.83642 * 9 7 2 11 11 C 1.35064 * 120.75585 * 180.02562 * 10 9 7 12 12 C 1.41500 * 119.35797 * 359.72421 * 11 10 9 13 13 O 1.22234 * 120.64802 * 180.27594 * 12 11 10 14 14 C 1.42074 * 118.69998 * 0.54215 * 12 11 10 15 15 O 1.36037 * 120.39462 * 179.73232 * 14 12 11 16 16 C 1.35344 * 119.20821 * 359.45907 * 14 12 11 17 17 H 0.96997 * 120.00654 * 359.97438 * 1 2 3 18 18 H 1.08001 * 119.62283 * 0.04285 * 10 9 7 19 19 H 1.08000 * 120.32257 * 180.02562 * 11 10 9 20 20 H 0.96699 * 113.99957 * 269.72197 * 15 14 12 21 21 H 1.08001 * 119.71194 * 180.25071 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2459 1.6179 0.0000 4 1 3.7060 1.3466 -0.0006 5 1 1.8871 2.3965 -1.2125 6 1 1.8871 2.3965 1.2125 7 6 2.0078 -1.2050 -0.0005 8 1 3.0474 -1.2284 0.2914 9 7 1.3748 -2.3608 -0.3710 10 6 0.3437 -2.3007 -1.2570 11 6 -0.3020 -3.4227 -1.6425 12 6 0.1068 -4.6725 -1.1200 13 8 -0.4575 -5.7032 -1.4565 14 6 1.1824 -4.7054 -0.1923 15 8 1.6000 -5.8875 0.3357 16 6 1.7901 -3.5472 0.1556 17 1 -0.4851 0.8400 0.0004 18 1 0.0383 -1.3450 -1.6567 19 1 -1.1192 -3.3670 -2.3464 20 1 1.1519 -6.1316 1.1571 21 1 2.6112 -3.5632 0.8570 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259954533.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:53 Heat of formation + Delta-G solvation = -70.660493 kcal Electronic energy + Delta-G solvation = -10495.849924 eV Core-core repulsion = 8336.619368 eV Total energy + Delta-G solvation = -2159.230556 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.72175 -38.99094 -37.58823 -35.04768 -32.56378 -30.97002 -27.11228 -24.27792 -23.72665 -20.86559 -18.67207 -18.33681 -17.50884 -17.00920 -16.27711 -15.81197 -15.05741 -14.76262 -14.20336 -13.99940 -13.77609 -13.51942 -12.94855 -12.52519 -12.16550 -11.97200 -11.08862 -10.14599 -9.90720 -9.09354 -8.74825 -6.51158 0.42470 0.72914 1.44604 1.50449 1.62372 2.05421 2.51742 2.65489 3.07164 3.57378 3.99125 4.36430 4.48656 4.83409 5.02348 5.12711 5.29774 5.57955 5.73797 6.28860 6.73143 6.89581 6.93547 7.52073 8.22133 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.079430 B = 0.012849 C = 0.011460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.425776 B = 2178.622814 C = 2442.779819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.020 3.980 3 Si 1.014 2.986 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.400 4.400 8 H 0.136 0.864 9 N -0.268 5.268 10 C 0.154 3.846 11 C -0.338 4.338 12 C 0.329 3.671 13 O -0.639 6.639 14 C -0.119 4.119 15 O -0.486 6.486 16 C 0.087 3.913 17 H 0.296 0.704 18 H 0.166 0.834 19 H 0.135 0.865 20 H 0.385 0.615 21 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 5.838 2.575 7.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.190 4.190 3 Si 0.834 3.166 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.154 0.846 9 N 0.064 4.936 10 C 0.019 3.981 11 C -0.362 4.362 12 C 0.234 3.766 13 O -0.539 6.539 14 C -0.169 4.169 15 O -0.293 6.293 16 C -0.048 4.048 17 H 0.107 0.893 18 H 0.183 0.817 19 H 0.153 0.847 20 H 0.239 0.761 21 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.843 5.649 2.000 7.705 hybrid contribution -0.456 0.472 0.466 0.804 sum 4.388 6.120 2.466 7.924 Atomic orbital electron populations 1.69875 1.08278 1.31585 1.39670 1.26631 0.96140 1.04132 0.92139 0.84565 0.79016 0.74493 0.78537 1.17295 1.19344 1.19726 1.20768 0.98244 0.83016 1.50601 0.84632 1.39718 1.21900 1.06304 1.25677 1.22026 0.88167 0.99760 0.88136 1.22028 1.08856 0.93030 1.12248 1.18027 0.84855 0.89550 0.84207 1.90597 1.60537 1.37509 1.65283 1.19249 1.03691 0.86337 1.07665 1.84800 1.64528 1.35674 1.44329 1.22473 1.00798 0.84426 0.97071 0.89306 0.81671 0.84719 0.76060 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -38.24 11.19 21.69 0.24 -38.00 14 2 C 0.02 0.80 4.96 85.00 0.42 1.22 14 3 Si 1.01 31.23 29.59 68.60 2.03 33.26 14 4 H -0.25 -7.26 7.11 99.48 0.71 -6.55 14 5 H -0.27 -8.22 7.11 99.48 0.71 -7.51 14 6 H -0.27 -8.36 7.11 99.48 0.71 -7.65 14 7 C -0.40 -16.86 9.44 84.12 0.79 -16.07 14 8 H 0.14 5.11 7.90 -2.91 -0.02 5.09 14 9 N -0.27 -12.00 2.77 -350.86 -0.97 -12.98 14 10 C 0.15 7.11 9.04 83.30 0.75 7.86 14 11 C -0.34 -16.51 10.00 22.34 0.22 -16.29 14 12 C 0.33 17.65 6.79 24.03 0.16 17.81 14 13 O -0.64 -38.67 17.72 8.75 0.16 -38.51 14 14 C -0.12 -5.58 6.72 22.55 0.15 -5.43 14 15 O -0.49 -20.73 13.34 -79.14 -1.06 -21.78 14 16 C 0.09 3.68 10.19 83.33 0.85 4.53 14 17 H 0.30 11.95 8.30 -92.71 -0.77 11.18 14 18 H 0.17 7.46 6.17 -2.91 -0.02 7.44 14 19 H 0.13 6.20 8.06 -2.91 -0.02 6.17 14 20 H 0.39 12.61 9.06 -74.06 -0.67 11.94 14 21 H 0.18 6.24 8.04 -2.91 -0.02 6.21 14 Total: -1.00 -62.41 200.61 4.35 -58.06 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.59 Total: 26.32 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 3.36 Total: -6.37 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.73 Total: -50.97 kcal Atomic # 8 Polarization: -59.39 SS G_CDS: -0.90 Total: -60.30 kcal Atomic # 14 Polarization: 31.23 SS G_CDS: 2.03 Total: 33.26 kcal Total: -62.41 4.35 -58.06 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954533.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.598 kcal (2) G-P(sol) polarization free energy of solvation -62.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds