Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47155 * 2 1 4 4 H 1.08999 * 109.47709 * 305.00445 * 3 2 1 5 5 C 1.50702 * 109.47164 * 185.00337 * 3 2 1 6 6 H 1.08001 * 119.99522 * 240.00119 * 5 3 2 7 7 C 1.37871 * 120.00021 * 60.00304 * 5 3 2 8 8 N 1.31515 * 119.99973 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99980 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47226 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47344 * 120.00012 * 9 7 5 12 12 H 1.48507 * 109.46615 * 239.99562 * 9 7 5 13 13 C 1.50703 * 109.47095 * 65.00499 * 3 2 1 14 14 C 1.41375 * 126.80544 * 85.01996 * 13 3 2 15 15 C 1.35450 * 103.98779 * 180.02562 * 14 13 3 16 16 O 1.34034 * 106.44531 * 0.02562 * 15 14 13 17 17 N 1.20925 * 111.56886 * 359.97438 * 16 15 14 18 18 H 1.09004 * 109.46712 * 299.99646 * 1 2 3 19 19 H 1.09003 * 109.47371 * 59.99495 * 1 2 3 20 20 H 1.09000 * 109.47304 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46712 * 240.00354 * 2 1 3 22 22 H 1.08999 * 109.46999 * 120.00182 * 2 1 3 23 23 H 0.97003 * 120.00304 * 180.02562 * 8 7 5 24 24 H 1.08002 * 128.00212 * 359.97438 * 14 13 3 25 25 H 1.08000 * 126.77687 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8801 -1.3813 10 1 6.5988 1.5452 -0.1938 11 1 6.4962 -0.5189 -1.4630 12 1 6.3998 1.6158 -2.6094 13 6 1.6414 2.1162 1.2878 14 6 2.3371 2.0714 2.5177 15 6 1.5798 2.8256 3.3498 16 8 0.5365 3.2567 2.6273 17 7 0.5878 2.8539 1.4882 18 1 -0.3633 0.5138 0.8901 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8901 22 1 1.8933 -0.5139 0.8900 23 1 3.8291 -0.0617 -2.9497 24 1 3.2586 1.5547 2.7420 25 1 1.7773 3.0371 4.3903 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958919.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = 27.109527 kcal Electronic energy + Delta-G solvation = -10834.699100 eV Core-core repulsion = 8815.541264 eV Total energy + Delta-G solvation = -2019.157835 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.64274 -37.53446 -34.34448 -33.18871 -32.21519 -29.43487 -25.63118 -23.95923 -22.86703 -21.09806 -18.67556 -18.27149 -18.09200 -16.65204 -15.90306 -14.98024 -14.69442 -14.14716 -14.06944 -13.28603 -13.09774 -12.79004 -12.54512 -12.14733 -12.06229 -11.81366 -11.56634 -11.07093 -10.61264 -10.45749 -10.23667 -8.13720 -6.28390 0.87451 1.42483 1.44062 1.55419 1.63304 2.41944 2.74331 3.14971 3.66420 4.11409 4.44909 4.50253 4.57263 4.70093 4.82295 5.02800 5.08534 5.24768 5.34864 5.43104 5.59828 5.79133 6.01285 6.26550 6.78336 7.39516 7.68997 8.92557 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.048185 B = 0.014596 C = 0.011991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.955012 B = 1917.830420 C = 2334.449202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C 0.115 3.885 4 H -0.002 1.002 5 C -0.528 4.528 6 H 0.063 0.937 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.963 3.037 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.283 1.283 13 C 0.032 3.968 14 C -0.241 4.241 15 C -0.053 4.053 16 O 0.083 5.917 17 N -0.417 5.417 18 H 0.038 0.962 19 H 0.035 0.965 20 H 0.060 0.940 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.264 0.736 24 H 0.173 0.827 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 1.298 9.568 9.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 C 0.096 3.904 4 H 0.016 0.984 5 C -0.566 4.566 6 H 0.081 0.919 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.788 3.212 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.209 1.209 13 C -0.125 4.125 14 C -0.263 4.263 15 C -0.134 4.134 16 O 0.020 5.980 17 N -0.125 5.125 18 H 0.057 0.943 19 H 0.054 0.946 20 H 0.079 0.921 21 H 0.094 0.906 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.191 0.809 25 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.701 1.625 8.642 8.957 hybrid contribution 1.588 -0.419 -0.250 1.661 sum -0.113 1.206 8.392 8.479 Atomic orbital electron populations 1.21706 0.96960 1.00642 0.99948 1.21398 0.93700 0.97671 1.01470 1.17158 0.95414 0.91876 0.85972 0.98414 1.21407 0.91087 1.38043 1.06074 0.91866 1.25776 1.03007 0.94642 0.95131 1.70023 1.36759 1.38858 1.09924 0.85420 0.79680 0.77925 0.78130 1.18757 1.20210 1.20946 1.24376 0.91093 0.97163 0.99887 1.22923 1.04497 1.06476 0.92390 1.26779 0.87589 0.97843 1.01217 1.84708 1.41240 1.56356 1.15679 1.73795 1.22873 1.17214 0.98569 0.94330 0.94629 0.92101 0.90631 0.94327 0.92713 0.80930 0.71679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 9.73 71.98 0.70 -5.10 15 2 C -0.10 -5.11 5.23 30.59 0.16 -4.95 15 3 C 0.12 6.10 2.24 -12.29 -0.03 6.07 15 4 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 5 C -0.53 -28.93 8.31 25.60 0.21 -28.72 15 6 H 0.06 3.34 6.98 -2.91 -0.02 3.32 15 7 C 0.01 0.73 5.29 84.65 0.45 1.18 15 8 N -0.92 -52.62 11.29 21.45 0.24 -52.38 15 9 Si 0.96 42.75 29.54 68.60 2.03 44.78 15 10 H -0.26 -11.20 7.11 99.48 0.71 -10.49 15 11 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 13 C 0.03 1.48 5.31 43.58 0.23 1.71 15 14 C -0.24 -8.87 10.07 22.40 0.23 -8.65 15 15 C -0.05 -1.48 12.30 67.18 0.83 -0.65 15 16 O 0.08 2.93 11.20 71.69 0.80 3.74 15 17 N -0.42 -18.33 11.67 -49.56 -0.58 -18.91 15 18 H 0.04 1.61 7.06 -2.39 -0.02 1.59 15 19 H 0.03 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 21 H 0.08 4.12 5.95 -2.39 -0.01 4.11 15 22 H 0.04 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.26 14.28 8.31 -92.71 -0.77 13.51 15 24 H 0.17 5.91 7.89 -2.91 -0.02 5.89 15 25 H 0.27 3.70 8.06 -2.91 -0.02 3.67 15 Total: -1.00 -64.30 220.31 6.44 -57.86 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.17 Total: 4.02 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 2.78 Total: -39.10 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -0.34 Total: -71.29 kcal Atomic # 8 Polarization: 2.93 SS G_CDS: 0.80 Total: 3.74 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -64.30 6.44 -57.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958919.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.970 kcal (2) G-P(sol) polarization free energy of solvation -64.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds