Wall clock time and date at job start Mon Mar 30 2020 02:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30257 * 125.61741 * 2 1 4 4 C 1.34473 * 108.69887 * 179.73652 * 3 2 1 5 5 C 1.34336 * 107.67002 * 0.38913 * 4 3 2 6 6 C 1.50696 * 126.44125 * 179.87579 * 5 4 3 7 7 C 1.52998 * 109.46969 * 89.71680 * 6 5 4 8 8 C 1.50706 * 109.47348 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99302 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00436 * 179.72505 * 8 7 6 11 11 N 1.31515 * 119.99684 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00405 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47050 * 59.99579 * 12 10 8 14 14 H 1.48496 * 109.47289 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46492 * 299.99554 * 12 10 8 16 16 O 1.33967 * 125.61986 * 179.97438 * 2 1 3 17 17 H 1.09003 * 109.46750 * 270.02630 * 1 2 3 18 18 H 1.08997 * 109.46976 * 30.02318 * 1 2 3 19 19 H 1.09000 * 109.47096 * 150.02926 * 1 2 3 20 20 H 1.07999 * 126.16937 * 180.26848 * 4 3 2 21 21 H 1.09000 * 109.47664 * 329.71609 * 6 5 4 22 22 H 1.09002 * 109.46824 * 209.71079 * 6 5 4 23 23 H 1.09001 * 109.47671 * 59.99812 * 7 6 5 24 24 H 1.08998 * 109.47454 * 299.99809 * 7 6 5 25 25 H 0.97004 * 120.00247 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5522 0.6676 0.0059 5 6 3.5698 -0.6757 0.0008 6 6 4.7938 -1.5548 0.0018 7 6 5.2070 -1.8520 1.4447 8 6 6.4307 -2.7317 1.4458 9 1 6.8694 -3.0475 0.5108 10 6 6.9931 -3.1290 2.6402 11 7 6.4619 -2.7399 3.7787 12 14 8.5102 -4.2188 2.6416 13 1 9.6181 -3.5258 1.9364 14 1 8.9155 -4.5014 4.0419 15 1 8.2032 -5.4953 1.9474 16 8 2.2873 -1.0890 0.0005 17 1 -0.3633 0.0005 1.0277 18 1 -0.3633 0.8898 -0.5142 19 1 -0.3633 -0.8902 -0.5134 20 1 4.4157 1.3162 0.0114 21 1 5.6085 -1.0441 -0.5116 22 1 4.5699 -2.4898 -0.5119 23 1 4.3924 -2.3627 1.9582 24 1 5.4308 -0.9171 1.9585 25 1 6.8578 -3.0191 4.6191 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986962.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:20 Heat of formation + Delta-G solvation = -21.847871 kcal Electronic energy + Delta-G solvation = -10280.277275 eV Core-core repulsion = 8258.996488 eV Total energy + Delta-G solvation = -2021.280787 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -44.26500 -36.21759 -35.71678 -34.12329 -32.07996 -28.89244 -26.31159 -23.78646 -22.84576 -21.74212 -18.69162 -17.71308 -17.66347 -16.50889 -15.54342 -15.44421 -14.54079 -14.39647 -14.00836 -13.84990 -13.37049 -13.12753 -12.82427 -12.58111 -12.27647 -12.03944 -11.81689 -11.55460 -11.29316 -10.58820 -9.53993 -8.22547 -6.35840 0.51727 1.42112 1.45490 1.53342 1.69201 1.79457 2.41062 3.11290 3.22239 3.93957 4.14578 4.26410 4.60275 4.64628 4.65760 4.71675 4.90029 5.03585 5.12629 5.41458 5.45551 5.57775 5.75844 6.13333 6.74410 6.80125 7.34480 8.89439 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.095839 B = 0.008140 C = 0.008020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.087906 B = 3438.868368 C = 3490.577955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.168 3.832 3 N -0.510 5.510 4 C -0.063 4.063 5 C -0.039 4.039 6 C -0.020 4.020 7 C 0.033 3.967 8 C -0.545 4.545 9 H 0.072 0.928 10 C -0.001 4.001 11 N -0.935 5.935 12 Si 0.971 3.029 13 H -0.263 1.263 14 H -0.286 1.286 15 H -0.265 1.265 16 O -0.218 6.218 17 H 0.104 0.896 18 H 0.116 0.884 19 H 0.106 0.894 20 H 0.196 0.804 21 H 0.107 0.893 22 H 0.077 0.923 23 H -0.016 1.016 24 H -0.004 1.004 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 3.026 -7.748 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.039 4.039 3 N -0.241 5.241 4 C -0.200 4.200 5 C -0.092 4.092 6 C -0.057 4.057 7 C -0.004 4.004 8 C -0.583 4.583 9 H 0.090 0.910 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.795 3.205 13 H -0.188 1.188 14 H -0.211 1.211 15 H -0.190 1.190 16 O -0.107 6.107 17 H 0.123 0.877 18 H 0.134 0.866 19 H 0.125 0.875 20 H 0.213 0.787 21 H 0.125 0.875 22 H 0.096 0.904 23 H 0.003 0.997 24 H 0.015 0.985 25 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.102 3.592 -7.573 11.658 hybrid contribution 1.090 -1.055 0.529 1.606 sum -7.012 2.537 -7.044 10.258 Atomic orbital electron populations 1.20517 0.77728 1.06600 1.05945 1.27443 0.98326 0.78160 0.99936 1.70365 1.02397 1.31247 1.20044 1.23282 0.95548 0.93251 1.07911 1.24077 0.83788 0.96204 1.05102 1.20227 0.88642 0.97352 0.99527 1.18970 0.95134 0.95423 0.90910 1.21603 1.12182 1.31188 0.93292 0.90959 1.26039 1.00965 0.97779 0.95064 1.70115 1.42534 1.46726 0.98158 0.85404 0.78836 0.79071 0.77162 1.18761 1.21119 1.18993 1.84385 1.17242 1.38717 1.70310 0.87715 0.86552 0.87504 0.78709 0.87502 0.90427 0.99723 0.98533 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 10.51 71.24 0.75 -0.20 15 2 C 0.17 5.45 8.34 88.34 0.74 6.19 15 3 N -0.51 -18.58 11.29 -303.82 -3.43 -22.01 15 4 C -0.06 -2.36 11.80 83.40 0.98 -1.37 15 5 C -0.04 -1.56 6.64 24.79 0.16 -1.40 15 6 C -0.02 -0.83 5.71 29.85 0.17 -0.66 15 7 C 0.03 1.75 4.96 29.85 0.15 1.90 15 8 C -0.54 -30.42 9.11 25.60 0.23 -30.19 15 9 H 0.07 3.74 7.74 -2.91 -0.02 3.72 15 10 C 0.00 -0.03 5.46 84.65 0.46 0.43 15 11 N -0.94 -57.23 13.29 21.45 0.28 -56.94 15 12 Si 0.97 43.51 29.54 68.60 2.03 45.54 15 13 H -0.26 -11.18 7.11 99.48 0.71 -10.47 15 14 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 16 O -0.22 -8.40 10.78 -3.69 -0.04 -8.44 15 17 H 0.10 1.68 8.14 -2.39 -0.02 1.66 15 18 H 0.12 1.71 8.14 -2.39 -0.02 1.69 15 19 H 0.11 1.53 8.14 -2.39 -0.02 1.52 15 20 H 0.20 6.38 8.06 -2.91 -0.02 6.35 15 21 H 0.11 3.94 8.14 -2.39 -0.02 3.92 15 22 H 0.08 3.07 8.14 -2.39 -0.02 3.05 15 23 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 15 24 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 15 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 15 Total: -1.00 -68.69 229.84 3.66 -65.03 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: 1.17 Total: 2.13 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.65 Total: -25.30 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -3.15 Total: -78.95 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.04 Total: -8.44 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.69 3.66 -65.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986962.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.186 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds