Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34610 * 119.75950 * 2 1 4 4 O 1.21283 * 119.79991 * 0.34585 * 3 2 1 5 5 C 1.50599 * 120.39947 * 180.32439 * 3 2 1 6 6 C 1.52939 * 109.63039 * 325.52755 * 5 3 2 7 7 C 1.50667 * 109.66952 * 48.05938 * 6 5 3 8 8 C 1.35698 * 120.15692 * 326.34607 * 7 6 5 9 9 C 1.40532 * 119.82487 * 179.80285 * 8 7 6 10 10 H 1.07999 * 119.99837 * 150.49247 * 9 8 7 11 11 C 1.40085 * 120.00324 * 330.49722 * 9 8 7 12 12 N 1.30766 * 119.99854 * 335.96283 * 11 9 8 13 13 Si 1.86796 * 119.99984 * 155.68536 * 11 9 8 14 14 H 1.48501 * 109.47338 * 180.27519 * 13 11 9 15 15 H 1.48503 * 109.47475 * 300.27519 * 13 11 9 16 16 H 1.48504 * 109.46998 * 60.27998 * 13 11 9 17 17 H 1.09003 * 109.47290 * 269.98029 * 1 2 3 18 18 H 1.09000 * 109.47564 * 29.97889 * 1 2 3 19 19 H 1.09002 * 109.47183 * 149.97734 * 1 2 3 20 20 H 1.08998 * 109.44222 * 85.57837 * 5 3 2 21 21 H 1.09000 * 109.44224 * 205.48244 * 5 3 2 22 22 H 1.09009 * 109.45313 * 168.25315 * 6 5 3 23 23 H 1.08994 * 109.45803 * 288.21880 * 6 5 3 24 24 H 1.07994 * 119.92979 * 146.09061 * 7 6 5 25 25 H 0.97000 * 119.99791 * 354.39578 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1331 1.1686 0.0000 4 8 1.5186 2.2142 0.0064 5 6 3.6390 1.1854 -0.0074 6 6 4.1700 0.0014 0.8021 7 6 3.4592 -1.2592 0.3827 8 6 2.1583 -1.2130 -0.0004 9 6 1.5033 -2.3923 -0.3942 10 1 0.4387 -2.4947 -0.2440 11 6 2.2313 -3.4352 -0.9815 12 7 3.3617 -3.1826 -1.5885 13 14 1.5910 -5.1877 -0.8910 14 1 2.5418 -6.0982 -1.5782 15 1 1.4577 -5.5932 0.5314 16 1 0.2646 -5.2650 -1.5542 17 1 -0.3634 -0.0004 1.0277 18 1 -0.3634 0.8901 -0.5135 19 1 -0.3634 -0.8898 -0.5142 20 1 3.9976 1.1131 -1.0341 21 1 3.9936 2.1160 0.4357 22 1 5.2403 -0.1078 0.6262 23 1 3.9925 0.1780 1.8629 24 1 3.9874 -2.2011 0.3829 25 1 3.6561 -2.2655 -1.7033 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260002816.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = -37.815410 kcal Electronic energy + Delta-G solvation = -10978.595634 eV Core-core repulsion = 8956.622442 eV Total energy + Delta-G solvation = -2021.973192 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.60878 -36.17342 -33.42330 -33.05687 -28.54431 -26.44481 -25.51338 -22.11503 -20.96878 -18.09703 -16.66644 -15.73894 -15.20789 -14.82721 -13.97358 -13.32954 -12.93507 -12.63074 -12.56454 -12.24433 -11.49004 -11.17463 -10.91354 -10.81301 -10.37786 -10.22916 -9.67863 -9.42368 -9.04693 -8.58768 -7.13287 -6.81772 -4.47921 2.91325 3.18131 3.22850 3.39602 3.90993 4.02789 4.13993 5.09255 5.40306 5.75443 5.89456 5.98048 6.13306 6.25977 6.38371 6.56134 6.76664 6.93570 7.03996 7.63357 7.68972 7.91774 8.17575 8.50283 8.64097 8.92741 9.19117 10.22302 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.058030 B = 0.015029 C = 0.012694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.396732 B = 1862.671768 C = 2205.280267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.548 5.548 3 C 0.513 3.487 4 O -0.573 6.573 5 C -0.133 4.133 6 C -0.042 4.042 7 C -0.423 4.423 8 C 0.263 3.737 9 C -0.556 4.556 10 H 0.073 0.927 11 C 0.049 3.951 12 N -0.806 5.806 13 Si 1.068 2.932 14 H -0.275 1.275 15 H -0.276 1.276 16 H -0.279 1.279 17 H 0.046 0.954 18 H 0.064 0.936 19 H 0.082 0.918 20 H 0.089 0.911 21 H 0.083 0.917 22 H 0.053 0.947 23 H 0.036 0.964 24 H 0.112 0.888 25 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 0.299 1.302 1.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.271 5.271 3 C 0.304 3.696 4 O -0.454 6.454 5 C -0.173 4.173 6 C -0.079 4.079 7 C -0.447 4.447 8 C 0.170 3.830 9 C -0.587 4.587 10 H 0.091 0.909 11 C -0.173 4.173 12 N -0.431 5.431 13 Si 0.892 3.108 14 H -0.200 1.200 15 H -0.202 1.202 16 H -0.205 1.205 17 H 0.064 0.936 18 H 0.083 0.917 19 H 0.101 0.899 20 H 0.107 0.893 21 H 0.102 0.898 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.130 0.870 25 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.106 -0.668 0.879 1.563 hybrid contribution -0.366 1.579 0.380 1.665 sum -1.472 0.912 1.259 2.141 Atomic orbital electron populations 1.21592 0.80490 1.02926 1.01130 1.45897 1.06827 1.06396 1.67979 1.20796 0.90977 0.82838 0.75018 1.90587 1.70804 1.32076 1.51937 1.21625 0.91582 1.00934 1.03138 1.19842 0.98508 0.92750 0.96817 1.22116 0.96798 0.96852 1.28951 1.17111 0.90706 0.82569 0.92570 1.20005 0.97629 0.99781 1.41331 0.90931 1.26730 0.93635 1.05553 0.91349 1.70363 1.18895 1.26885 1.26946 0.83600 0.76156 0.73429 0.77597 1.20028 1.20172 1.20514 0.93551 0.91746 0.89902 0.89312 0.89830 0.92861 0.94520 0.86978 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.69 10.11 59.84 0.61 2.30 15 2 N -0.55 -13.13 3.09 -121.39 -0.37 -13.51 15 3 C 0.51 12.04 7.47 -11.11 -0.08 11.96 15 4 O -0.57 -14.26 16.63 5.55 0.09 -14.16 15 5 C -0.13 -2.70 6.12 -27.96 -0.17 -2.87 15 6 C -0.04 -0.88 6.21 -27.93 -0.17 -1.05 15 7 C -0.42 -10.56 8.03 -35.23 -0.28 -10.84 15 8 C 0.26 6.74 5.78 -84.31 -0.49 6.25 15 9 C -0.56 -14.37 8.24 -38.02 -0.31 -14.68 15 10 H 0.07 1.80 6.38 -52.49 -0.33 1.46 15 11 C 0.05 1.23 4.88 -17.31 -0.08 1.15 15 12 N -0.81 -21.39 12.42 55.55 0.69 -20.70 15 13 Si 1.07 21.57 30.00 -169.99 -5.10 16.47 15 14 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 15 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 16 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 17 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 18 H 0.06 1.28 7.40 -51.93 -0.38 0.90 15 19 H 0.08 1.67 6.03 -51.93 -0.31 1.35 15 20 H 0.09 1.72 8.14 -51.93 -0.42 1.30 15 21 H 0.08 1.49 8.14 -51.93 -0.42 1.07 15 22 H 0.05 1.01 8.14 -51.92 -0.42 0.59 15 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.11 3.00 6.56 -52.49 -0.34 2.66 15 25 H 0.30 8.15 6.75 -40.82 -0.28 7.88 15 LS Contribution 214.12 15.07 3.23 3.23 Total: -1.00 -28.57 214.12 -5.02 -33.58 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.56 Total: 2.90 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.99 Total: -7.80 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.31 Total: -34.21 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.09 Total: -14.16 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.10 Total: 16.47 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -28.57 -5.02 -33.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002816.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.233 kcal (2) G-P(sol) polarization free energy of solvation -28.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds