Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34610 * 119.75950 * 2 1 4 4 O 1.21283 * 119.79991 * 0.34585 * 3 2 1 5 5 C 1.50599 * 120.39947 * 180.32439 * 3 2 1 6 6 C 1.52939 * 109.63039 * 325.52755 * 5 3 2 7 7 C 1.50667 * 109.66952 * 48.05938 * 6 5 3 8 8 C 1.35698 * 120.15692 * 326.34607 * 7 6 5 9 9 C 1.40532 * 119.82487 * 179.80285 * 8 7 6 10 10 H 1.07999 * 119.99837 * 150.49247 * 9 8 7 11 11 C 1.40085 * 120.00324 * 330.49722 * 9 8 7 12 12 N 1.30766 * 119.99854 * 335.96283 * 11 9 8 13 13 Si 1.86796 * 119.99984 * 155.68536 * 11 9 8 14 14 H 1.48501 * 109.47338 * 180.27519 * 13 11 9 15 15 H 1.48503 * 109.47475 * 300.27519 * 13 11 9 16 16 H 1.48504 * 109.46998 * 60.27998 * 13 11 9 17 17 H 1.09003 * 109.47290 * 269.98029 * 1 2 3 18 18 H 1.09000 * 109.47564 * 29.97889 * 1 2 3 19 19 H 1.09002 * 109.47183 * 149.97734 * 1 2 3 20 20 H 1.08998 * 109.44222 * 85.57837 * 5 3 2 21 21 H 1.09000 * 109.44224 * 205.48244 * 5 3 2 22 22 H 1.09009 * 109.45313 * 168.25315 * 6 5 3 23 23 H 1.08994 * 109.45803 * 288.21880 * 6 5 3 24 24 H 1.07994 * 119.92979 * 146.09061 * 7 6 5 25 25 H 0.97000 * 119.99791 * 354.39578 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1331 1.1686 0.0000 4 8 1.5186 2.2142 0.0064 5 6 3.6390 1.1854 -0.0074 6 6 4.1700 0.0014 0.8021 7 6 3.4592 -1.2592 0.3827 8 6 2.1583 -1.2130 -0.0004 9 6 1.5033 -2.3923 -0.3942 10 1 0.4387 -2.4947 -0.2440 11 6 2.2313 -3.4352 -0.9815 12 7 3.3617 -3.1826 -1.5885 13 14 1.5910 -5.1877 -0.8910 14 1 2.5418 -6.0982 -1.5782 15 1 1.4577 -5.5932 0.5314 16 1 0.2646 -5.2650 -1.5542 17 1 -0.3634 -0.0004 1.0277 18 1 -0.3634 0.8901 -0.5135 19 1 -0.3634 -0.8898 -0.5142 20 1 3.9976 1.1131 -1.0341 21 1 3.9936 2.1160 0.4357 22 1 5.2403 -0.1078 0.6262 23 1 3.9925 0.1780 1.8629 24 1 3.9874 -2.2011 0.3829 25 1 3.6561 -2.2655 -1.7033 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260002816.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = -55.120511 kcal Electronic energy + Delta-G solvation = -10979.346040 eV Core-core repulsion = 8956.622442 eV Total energy + Delta-G solvation = -2022.723597 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.43839 -38.06907 -35.32358 -34.77765 -30.43311 -28.17002 -27.37659 -23.92659 -22.81366 -19.98867 -18.45240 -17.56804 -17.01780 -16.69558 -15.61457 -15.05243 -14.86581 -14.36149 -14.28360 -14.04145 -13.17274 -12.87677 -12.63097 -12.52975 -12.00918 -11.92808 -11.49630 -11.23384 -10.87694 -10.47376 -9.11721 -8.73563 -6.47490 1.06900 1.55345 1.59541 1.84217 2.13894 2.21382 2.44194 3.16426 3.65591 4.15613 4.26097 4.32450 4.50144 4.65972 4.73201 4.93065 5.09131 5.13638 5.23725 5.65148 5.74110 5.92443 6.23451 6.57878 6.72798 7.03893 7.28459 8.22216 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.058030 B = 0.015029 C = 0.012694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.396732 B = 1862.671768 C = 2205.280267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.557 5.557 3 C 0.503 3.497 4 O -0.591 6.591 5 C -0.127 4.127 6 C -0.039 4.039 7 C -0.427 4.427 8 C 0.245 3.755 9 C -0.581 4.581 10 H 0.077 0.923 11 C 0.012 3.988 12 N -0.828 5.828 13 Si 1.118 2.882 14 H -0.276 1.276 15 H -0.266 1.266 16 H -0.260 1.260 17 H 0.060 0.940 18 H 0.070 0.930 19 H 0.084 0.916 20 H 0.097 0.903 21 H 0.114 0.886 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 0.144 1.625 2.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.280 5.280 3 C 0.295 3.705 4 O -0.474 6.474 5 C -0.167 4.167 6 C -0.076 4.076 7 C -0.451 4.451 8 C 0.152 3.848 9 C -0.612 4.612 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.452 5.452 13 Si 0.936 3.064 14 H -0.201 1.201 15 H -0.191 1.191 16 H -0.184 1.184 17 H 0.078 0.922 18 H 0.089 0.911 19 H 0.103 0.897 20 H 0.115 0.885 21 H 0.132 0.868 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.241 -0.800 1.206 1.906 hybrid contribution -0.325 1.679 0.302 1.737 sum -1.565 0.880 1.509 2.345 Atomic orbital electron populations 1.21717 0.79149 1.03299 1.02161 1.46041 1.08009 1.06124 1.67847 1.21392 0.92335 0.82356 0.74426 1.90572 1.71517 1.32432 1.52850 1.21669 0.89297 1.01893 1.03821 1.19842 0.99392 0.91212 0.97181 1.22252 0.96895 0.97677 1.28266 1.17313 0.91348 0.83192 0.92924 1.20303 0.98175 1.00602 1.42106 0.90470 1.28152 0.93080 1.09125 0.90023 1.70481 1.20125 1.25818 1.28776 0.82972 0.76383 0.68801 0.78221 1.20108 1.19114 1.18447 0.92179 0.91138 0.89705 0.88466 0.86822 0.90645 0.93816 0.89323 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.20 10.11 127.77 1.29 4.49 15 2 N -0.56 -26.25 3.09 -656.45 -2.03 -28.28 15 3 C 0.50 22.88 7.47 87.65 0.65 23.54 15 4 O -0.59 -28.55 16.63 -3.04 -0.05 -28.60 15 5 C -0.13 -4.87 6.12 29.80 0.18 -4.69 15 6 C -0.04 -1.57 6.21 29.82 0.19 -1.38 15 7 C -0.43 -21.11 8.03 25.09 0.20 -20.91 15 8 C 0.25 12.48 5.78 37.86 0.22 12.70 15 9 C -0.58 -29.85 8.24 23.28 0.19 -29.66 15 10 H 0.08 3.78 6.38 -2.91 -0.02 3.77 15 11 C 0.01 0.62 4.88 85.30 0.42 1.04 15 12 N -0.83 -44.13 12.42 21.85 0.27 -43.86 15 13 Si 1.12 42.52 30.00 68.60 2.06 44.58 15 14 H -0.28 -10.46 7.11 99.48 0.71 -9.76 15 15 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 16 H -0.26 -9.02 7.11 99.48 0.71 -8.32 15 17 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 18 H 0.07 2.74 7.40 -2.39 -0.02 2.72 15 19 H 0.08 3.36 6.03 -2.39 -0.01 3.34 15 20 H 0.10 3.57 8.14 -2.39 -0.02 3.55 15 21 H 0.11 3.67 8.14 -2.39 -0.02 3.65 15 22 H 0.08 2.69 8.14 -2.38 -0.02 2.67 15 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.09 4.79 6.56 -2.91 -0.02 4.77 15 25 H 0.29 15.75 6.75 -92.71 -0.63 15.13 15 Total: -1.00 -59.47 214.12 4.92 -54.55 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 1.33 Total: 16.49 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 3.34 Total: -14.88 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.76 Total: -72.14 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.06 Total: 44.58 kcal Total: -59.47 4.92 -54.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002816.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.570 kcal (2) G-P(sol) polarization free energy of solvation -59.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds