Wall clock time and date at job start Mon Mar 30 2020 01:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.51607 * 2 1 4 4 C 1.55464 * 118.06023 * 214.09247 * 2 1 3 5 5 H 1.09008 * 119.42141 * 141.80759 * 4 2 1 6 6 C 1.54269 * 118.30497 * 346.16431 * 4 2 1 7 7 C 1.54887 * 104.19339 * 272.80115 * 6 4 2 8 8 H 1.09001 * 110.91540 * 156.32438 * 7 6 4 9 9 C 1.50701 * 110.75902 * 279.62406 * 7 6 4 10 10 H 1.08002 * 119.99761 * 113.32410 * 9 7 6 11 11 C 1.37871 * 119.99694 * 293.60973 * 9 7 6 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 7 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 7 14 14 H 1.48494 * 109.47230 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47301 * 119.99669 * 13 11 9 16 16 H 1.48498 * 109.47430 * 239.99516 * 13 11 9 17 17 C 1.54889 * 102.75037 * 37.94207 * 7 6 4 18 18 C 1.53003 * 117.46011 * 145.47942 * 2 1 3 19 19 H 1.08999 * 119.29637 * 219.84172 * 18 2 1 20 20 H 1.09004 * 109.46872 * 274.52464 * 1 2 3 21 21 H 1.09007 * 109.46628 * 34.52112 * 1 2 3 22 22 H 1.08997 * 109.47175 * 154.52003 * 1 2 3 23 23 H 1.08997 * 109.46983 * 205.47473 * 3 2 1 24 24 H 1.08997 * 109.47023 * 325.47560 * 3 2 1 25 25 H 1.09002 * 109.47145 * 85.48099 * 3 2 1 26 26 H 1.08998 * 110.48904 * 154.11792 * 6 4 2 27 27 H 1.09001 * 110.48456 * 31.47636 * 6 4 2 28 28 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 29 29 H 1.08997 * 110.48926 * 80.73186 * 17 7 6 30 30 H 1.08999 * 110.48858 * 203.24517 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1891 1.3808 0.0000 4 6 2.2613 -1.1361 -0.7690 5 1 3.1718 -0.9077 -1.3233 6 6 1.4416 -2.3665 -1.2096 7 6 1.4961 -3.3166 0.0125 8 1 0.6512 -4.0052 0.0080 9 6 2.7990 -4.0733 0.0430 10 1 3.5109 -3.8911 0.8345 11 6 3.0846 -4.9941 -0.9427 12 7 2.2177 -5.2160 -1.9064 13 14 4.7029 -5.9265 -0.9091 14 1 5.4973 -5.4969 0.2696 15 1 4.4327 -7.3840 -0.8201 16 1 5.4654 -5.6394 -2.1506 17 6 1.4010 -2.3389 1.2101 18 6 2.2356 -1.1186 0.7694 19 1 3.1292 -0.8861 1.3486 20 1 -0.3633 0.0811 1.0245 21 1 -0.3633 0.8468 -0.5824 22 1 -0.3633 -0.9277 -0.4421 23 1 3.1828 1.3090 -0.4420 24 1 1.5815 2.0733 -0.5824 25 1 2.2725 1.7435 1.0245 26 1 1.8985 -2.8376 -2.0798 27 1 0.4120 -2.0814 -1.4255 28 1 2.4188 -5.8635 -2.6000 29 1 0.3648 -2.0494 1.3848 30 1 1.8261 -2.7909 2.1062 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260018255.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:06 Heat of formation + Delta-G solvation = -7.442373 kcal Electronic energy + Delta-G solvation = -11090.040230 eV Core-core repulsion = 9270.643117 eV Total energy + Delta-G solvation = -1819.397113 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 180.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.65089 -35.47665 -33.10553 -29.23447 -28.75856 -28.37639 -26.39546 -21.52076 -20.33307 -19.39759 -17.98193 -16.68168 -16.18545 -15.76131 -14.86393 -14.40603 -13.80534 -13.68472 -13.07502 -12.94801 -12.76998 -12.76519 -12.45256 -12.21915 -12.12427 -11.80667 -11.48347 -11.15758 -10.83158 -10.53962 -10.13970 -9.98231 -8.09992 -6.19236 1.38020 1.39849 1.51150 2.43354 2.84618 3.20864 3.81085 4.00355 4.09796 4.31482 4.59881 4.61808 4.79097 4.86971 5.01265 5.02871 5.11230 5.15207 5.15736 5.20315 5.31270 5.38347 5.53032 5.54231 5.64716 5.72226 5.91493 5.99577 6.44760 6.91369 7.47386 8.98538 Molecular weight = 180.12amu Principal moments of inertia in cm(-1) A = 0.065866 B = 0.012332 C = 0.011890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.006411 B = 2269.974112 C = 2354.261032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C -0.106 4.106 4 C -0.159 4.159 5 H 0.087 0.913 6 C -0.075 4.075 7 C 0.039 3.961 8 H -0.005 1.005 9 C -0.511 4.511 10 H 0.049 0.951 11 C 0.009 3.991 12 N -0.922 5.922 13 Si 0.950 3.050 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.084 4.084 18 C -0.149 4.149 19 H 0.097 0.903 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.259 0.741 29 H 0.060 0.940 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 10.109 3.294 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.101 4.101 3 C -0.163 4.163 4 C -0.177 4.177 5 H 0.105 0.895 6 C -0.113 4.113 7 C 0.021 3.979 8 H 0.013 0.987 9 C -0.550 4.550 10 H 0.067 0.933 11 C -0.189 4.189 12 N -0.562 5.562 13 Si 0.777 3.223 14 H -0.192 1.192 15 H -0.206 1.206 16 H -0.208 1.208 17 C -0.121 4.121 18 C -0.167 4.167 19 H 0.115 0.885 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.895 9.993 3.151 10.516 hybrid contribution 0.940 -1.083 -0.317 1.468 sum 0.045 8.910 2.834 9.350 Atomic orbital electron populations 1.21398 0.92110 1.02007 1.02078 1.22254 0.95100 0.90911 1.01830 1.21298 0.99848 0.92708 1.02483 1.23676 1.00779 0.97795 0.95417 0.89501 1.21766 0.96386 0.93383 0.99775 1.19782 0.94742 0.92294 0.91104 0.98675 1.21406 1.03442 1.20804 1.09312 0.93260 1.25733 0.99876 0.97911 0.95377 1.70085 1.36672 1.35487 1.13983 0.85618 0.80340 0.78424 0.77966 1.19180 1.20648 1.20791 1.21948 0.98016 0.94175 0.98004 1.23181 1.01120 0.97639 0.94778 0.88536 0.91505 0.90822 0.93366 0.92951 0.90688 0.91148 0.94030 0.94056 0.93208 0.92165 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.45 71.98 0.61 -2.88 16 2 C -0.10 -3.27 2.74 -51.33 -0.14 -3.41 16 3 C -0.11 -2.66 9.85 71.98 0.71 -1.95 16 4 C -0.16 -6.57 6.46 -9.22 -0.06 -6.63 16 5 H 0.09 3.63 8.14 -2.38 -0.02 3.61 16 6 C -0.08 -3.67 5.57 31.67 0.18 -3.50 16 7 C 0.04 2.04 2.89 -10.25 -0.03 2.01 16 8 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 9 C -0.51 -28.98 8.18 25.60 0.21 -28.77 16 10 H 0.05 2.77 7.78 -2.91 -0.02 2.75 16 11 C 0.01 0.51 5.22 84.65 0.44 0.95 16 12 N -0.92 -55.15 12.06 21.45 0.26 -54.89 16 13 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 C -0.08 -3.58 5.76 31.67 0.18 -3.40 16 18 C -0.15 -5.74 6.37 -10.07 -0.06 -5.81 16 19 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 20 H 0.07 1.76 8.03 -2.39 -0.02 1.75 16 21 H 0.07 1.78 7.93 -2.38 -0.02 1.77 16 22 H 0.05 1.62 5.31 -2.39 -0.01 1.60 16 23 H 0.05 1.33 7.96 -2.39 -0.02 1.31 16 24 H 0.07 1.58 7.93 -2.39 -0.02 1.56 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 2.31 6.72 -2.39 -0.02 2.29 16 27 H 0.04 1.89 6.01 -2.39 -0.01 1.88 16 28 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.06 2.32 6.79 -2.39 -0.02 2.31 16 30 H 0.05 2.09 8.05 -2.39 -0.02 2.07 16 Total: -1.00 -61.33 237.78 5.41 -55.92 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.10 Total: 5.43 kcal Atomic # 6 Polarization: -55.41 SS G_CDS: 2.03 Total: -53.38 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.26 Total: -54.89 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -61.33 5.41 -55.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018255.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.478 kcal (2) G-P(sol) polarization free energy of solvation -61.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds