Wall clock time and date at job start Mon Mar 30 2020 01:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40768 * 126.25589 * 2 1 4 4 C 1.47759 * 125.86266 * 0.03918 * 3 2 1 5 5 O 1.20821 * 120.00181 * 359.97438 * 4 3 2 6 6 N 1.31610 * 108.26503 * 180.02562 * 3 2 1 7 7 O 1.41491 * 108.69833 * 359.78148 * 6 3 2 8 8 C 1.35082 * 108.14927 * 0.36878 * 7 6 3 9 9 C 1.39929 * 126.30053 * 179.90420 * 8 7 6 10 10 H 1.08000 * 119.99957 * 185.86301 * 9 8 7 11 11 C 1.40465 * 120.00156 * 5.86592 * 9 8 7 12 12 N 1.30558 * 119.99992 * 6.45113 * 11 9 8 13 13 Si 1.86803 * 120.00025 * 186.17768 * 11 9 8 14 14 H 1.48498 * 109.47030 * 265.28601 * 13 11 9 15 15 H 1.48495 * 109.47196 * 25.28781 * 13 11 9 16 16 H 1.48502 * 109.46718 * 145.28678 * 13 11 9 17 17 H 1.08993 * 109.47096 * 269.94935 * 1 2 3 18 18 H 1.08994 * 109.47152 * 29.96090 * 1 2 3 19 19 H 1.09003 * 109.47077 * 149.95125 * 1 2 3 20 20 H 1.08004 * 119.99641 * 179.97438 * 4 3 2 21 21 H 0.96995 * 120.00192 * 179.72888 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3395 1.1351 0.0000 4 6 1.8858 2.5413 0.0008 5 8 0.7045 2.7950 0.0011 6 7 3.5913 0.7286 -0.0006 7 8 3.6087 -0.6862 0.0042 8 6 2.3304 -1.1228 -0.0007 9 6 1.9110 -2.4577 -0.0002 10 1 0.8619 -2.6942 -0.0999 11 6 2.8543 -3.4903 0.1300 12 7 4.1043 -3.2052 0.3765 13 14 2.3190 -5.2717 -0.0420 14 1 2.0339 -5.8348 1.3021 15 1 1.0938 -5.3418 -0.8781 16 1 3.4038 -6.0544 -0.6868 17 1 -0.3633 -0.0009 1.0276 18 1 -0.3633 0.8903 -0.5132 19 1 -0.3633 -0.8896 -0.5146 20 1 2.6102 3.3424 0.0012 21 1 4.7550 -3.9184 0.4703 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260024027.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:41 Heat of formation + Delta-G solvation = -32.431376 kcal Electronic energy + Delta-G solvation = -10400.442385 eV Core-core repulsion = 8242.869568 eV Total energy + Delta-G solvation = -2157.572817 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.053 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.66139 -39.86098 -35.96151 -34.21526 -32.59947 -29.27109 -26.42093 -25.94578 -22.19287 -20.62945 -19.45552 -17.29338 -16.71072 -16.40883 -16.27716 -15.34562 -14.99780 -14.66069 -14.22261 -13.63972 -13.50194 -13.06444 -12.79522 -12.42589 -11.97597 -11.59853 -11.54944 -11.10002 -10.84842 -9.54569 -8.99832 -6.92397 0.08928 1.07355 1.37246 1.57254 1.68357 2.10370 2.28030 2.49624 2.98698 3.45356 4.08799 4.51612 4.75625 4.86470 4.97112 5.03515 5.15770 5.50032 5.64783 5.91709 6.17519 6.37398 6.39170 7.10862 8.00329 Molecular weight = 181.05amu Principal moments of inertia in cm(-1) A = 0.076619 B = 0.012756 C = 0.011025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.354816 B = 2194.452840 C = 2539.035795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.413 4.413 3 C 0.010 3.990 4 C 0.439 3.561 5 O -0.465 6.465 6 N -0.427 5.427 7 O -0.109 6.109 8 C 0.194 3.806 9 C -0.432 4.432 10 H 0.126 0.874 11 C 0.022 3.978 12 N -0.784 5.784 13 Si 1.014 2.986 14 H -0.253 1.253 15 H -0.245 1.245 16 H -0.262 1.262 17 H 0.037 0.963 18 H 0.056 0.944 19 H 0.052 0.948 20 H 0.165 0.835 21 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.241 -1.212 -0.595 3.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.427 4.427 3 C -0.148 4.148 4 C 0.295 3.705 5 O -0.333 6.333 6 N -0.190 5.190 7 O -0.115 6.115 8 C 0.135 3.865 9 C -0.461 4.461 10 H 0.144 0.856 11 C -0.201 4.201 12 N -0.408 5.408 13 Si 0.831 3.169 14 H -0.177 1.177 15 H -0.167 1.167 16 H -0.186 1.186 17 H 0.056 0.944 18 H 0.075 0.925 19 H 0.071 0.929 20 H 0.180 0.820 21 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.368 -0.698 -0.554 2.530 hybrid contribution -0.400 -0.844 0.036 0.935 sum -2.768 -1.542 -0.518 3.211 Atomic orbital electron populations 1.19613 0.88925 1.00710 0.99641 1.21231 0.97956 0.89195 1.34350 1.24093 0.93079 0.99299 0.98356 1.23793 0.90830 0.87660 0.68258 1.90321 1.22481 1.85694 1.34847 1.80127 1.17403 0.86566 1.34911 1.89235 1.25541 1.17207 1.79499 1.20646 0.82693 0.95168 0.88027 1.19699 0.97499 0.87122 1.41797 0.85604 1.27537 0.93726 1.08288 0.90512 1.69734 1.04427 1.39369 1.27319 0.84703 0.79892 0.71970 0.80353 1.17723 1.16740 1.18562 0.94376 0.92502 0.92949 0.81951 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.38 9.60 71.24 0.68 -0.70 14 2 C -0.41 -21.36 6.26 -19.01 -0.12 -21.48 14 3 C 0.01 0.49 7.13 42.31 0.30 0.79 14 4 C 0.44 16.14 11.80 70.34 0.83 16.97 14 5 O -0.46 -18.40 15.66 -1.63 -0.03 -18.42 14 6 N -0.43 -23.07 12.96 -48.71 -0.63 -23.70 14 7 O -0.11 -6.52 10.53 26.88 0.28 -6.24 14 8 C 0.19 10.92 6.85 22.92 0.16 11.08 14 9 C -0.43 -22.04 9.08 23.22 0.21 -21.83 14 10 H 0.13 5.80 7.23 -2.91 -0.02 5.78 14 11 C 0.02 1.02 5.50 85.42 0.47 1.49 14 12 N -0.78 -39.97 12.08 21.92 0.26 -39.71 14 13 Si 1.01 33.71 29.57 68.60 2.03 35.74 14 14 H -0.25 -7.98 7.11 99.48 0.71 -7.28 14 15 H -0.24 -7.69 7.11 99.48 0.71 -6.98 14 16 H -0.26 -8.27 7.11 99.48 0.71 -7.57 14 17 H 0.04 1.59 8.14 -2.39 -0.02 1.57 14 18 H 0.06 2.37 6.52 -2.39 -0.02 2.36 14 19 H 0.05 2.14 7.47 -2.39 -0.02 2.12 14 20 H 0.16 4.21 8.06 -2.91 -0.02 4.19 14 21 H 0.31 13.59 8.29 -92.71 -0.77 12.82 14 Total: -1.00 -64.69 204.04 5.71 -58.99 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.25 Total: 7.01 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 2.53 Total: -13.67 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.37 Total: -63.40 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: 0.26 Total: -24.66 kcal Atomic # 14 Polarization: 33.71 SS G_CDS: 2.03 Total: 35.74 kcal Total: -64.69 5.71 -58.99 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260024027.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.554 kcal (2) G-P(sol) polarization free energy of solvation -64.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds