Wall clock time and date at job start Mon Mar 30 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47392 * 2 1 4 4 H 1.09002 * 109.47385 * 305.59834 * 3 2 1 5 5 C 1.50705 * 109.47316 * 65.59493 * 3 2 1 6 6 H 1.08000 * 119.99480 * 35.14919 * 5 3 2 7 7 C 1.37869 * 120.00363 * 214.87262 * 5 3 2 8 8 N 1.31517 * 119.99821 * 355.03948 * 7 5 3 9 9 Si 1.86804 * 120.00351 * 175.04149 * 7 5 3 10 10 H 1.48504 * 109.46841 * 60.00088 * 9 7 5 11 11 H 1.48501 * 109.47344 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46985 * 300.00331 * 9 7 5 13 13 C 1.50704 * 109.47500 * 185.59653 * 3 2 1 14 14 C 1.34325 * 126.44371 * 119.99958 * 13 3 2 15 15 N 1.34476 * 107.66803 * 180.02562 * 14 13 3 16 16 C 1.30259 * 108.70400 * 0.02562 * 15 14 13 17 17 O 1.33966 * 108.75488 * 359.73231 * 16 15 14 18 18 H 1.09010 * 109.46770 * 54.81559 * 1 2 3 19 19 H 1.09000 * 109.47324 * 174.81492 * 1 2 3 20 20 H 1.09000 * 109.47144 * 294.82106 * 1 2 3 21 21 H 1.08995 * 109.47427 * 239.99540 * 2 1 3 22 22 H 1.09004 * 109.46702 * 119.99952 * 2 1 3 23 23 H 0.97006 * 120.00133 * 179.97438 * 8 7 5 24 24 H 1.08002 * 126.16533 * 359.97438 * 14 13 3 25 25 H 1.07999 * 125.62073 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5972 1.9845 -0.8356 5 6 1.6540 2.1118 1.2939 6 1 1.6384 1.5435 2.2121 7 6 1.3265 3.4510 1.3064 8 7 1.4445 4.1670 0.2096 9 14 0.7150 4.2484 2.8811 10 1 1.7538 4.1234 3.9349 11 1 0.4340 5.6851 2.6317 12 1 -0.5283 3.5707 3.3286 13 6 3.5407 1.4447 -0.1386 14 6 4.2500 2.0163 -1.1257 15 7 5.5519 1.7893 -0.8770 16 6 5.6530 1.1009 0.2242 17 8 4.4235 0.8775 0.7068 18 1 -0.3633 0.5922 -0.8400 19 1 -0.3634 -1.0234 -0.0929 20 1 -0.3633 0.4314 0.9327 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5139 0.8900 23 1 1.2137 5.1092 0.2182 24 1 3.8472 2.5596 -1.9678 25 1 6.5761 0.7694 0.6762 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260030435.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:23 Heat of formation + Delta-G solvation = 2.575900 kcal Electronic energy + Delta-G solvation = -10819.422690 eV Core-core repulsion = 8799.200997 eV Total energy + Delta-G solvation = -2020.221693 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.18464 -35.15083 -33.60599 -31.96347 -29.46082 -26.47159 -23.89960 -21.71224 -21.04042 -19.52743 -16.84974 -16.35061 -15.38568 -14.63015 -13.78667 -13.62950 -13.22955 -12.58994 -12.25377 -11.62145 -11.14158 -11.01437 -10.66925 -10.53480 -10.34067 -10.24224 -9.72120 -9.54444 -9.15725 -8.66659 -7.59644 -6.20418 -4.25943 2.64833 3.24200 3.29327 3.31768 3.75037 3.91551 4.31280 5.07947 5.22658 5.89653 6.05433 6.19524 6.29898 6.43610 6.66798 6.67698 6.90480 7.05304 7.12448 7.24315 7.36152 7.53460 7.74003 8.13222 8.72339 8.82090 9.39232 10.87266 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.036160 B = 0.016934 C = 0.013637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.157544 B = 1653.040501 C = 2052.678973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C 0.105 3.895 4 H 0.089 0.911 5 C -0.513 4.513 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.043 3.957 14 C -0.094 4.094 15 N -0.490 5.490 16 C 0.104 3.896 17 O -0.205 6.205 18 H 0.047 0.953 19 H 0.032 0.968 20 H 0.062 0.938 21 H 0.035 0.965 22 H 0.049 0.951 23 H 0.266 0.734 24 H 0.170 0.830 25 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 -5.022 0.344 5.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.148 4.148 3 C 0.086 3.914 4 H 0.107 0.893 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.198 1.198 13 C -0.011 4.011 14 C -0.232 4.232 15 N -0.220 5.220 16 C -0.121 4.121 17 O -0.091 6.091 18 H 0.066 0.934 19 H 0.051 0.949 20 H 0.082 0.918 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.187 0.813 25 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.571 -4.652 -0.049 4.911 hybrid contribution -0.565 0.539 1.239 1.465 sum 1.005 -4.114 1.190 4.399 Atomic orbital electron populations 1.21579 0.96035 0.98868 1.02569 1.21553 0.95928 0.97917 0.99379 1.17902 0.79789 0.92980 1.00708 0.89291 1.20947 1.46109 0.94585 0.93384 0.92072 1.25059 0.94670 0.97294 0.96586 1.69907 1.46541 1.07946 1.27358 0.86571 0.79514 0.78241 0.83294 1.20126 1.21093 1.19829 1.25296 0.95325 0.93640 0.86888 1.22782 0.87753 1.09029 1.03645 1.70189 1.21477 1.14836 1.15494 1.27514 0.88267 1.02670 0.93669 1.84413 1.16724 1.60888 1.47070 0.93365 0.94878 0.91845 0.94580 0.93202 0.92391 0.81282 0.75263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.65 37.16 0.36 -2.13 15 2 C -0.11 -2.26 5.37 -26.73 -0.14 -2.40 15 3 C 0.11 2.54 2.27 -92.92 -0.21 2.33 15 4 H 0.09 2.29 7.35 -51.93 -0.38 1.91 15 5 C -0.51 -13.54 7.39 -34.44 -0.25 -13.79 15 6 H 0.06 1.62 7.82 -52.49 -0.41 1.20 15 7 C 0.07 1.83 5.45 -17.82 -0.10 1.73 15 8 N -0.88 -24.54 12.84 55.43 0.71 -23.83 15 9 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 15 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 13 C 0.04 1.03 5.87 -35.69 -0.21 0.82 15 14 C -0.09 -2.21 11.79 -17.77 -0.21 -2.42 15 15 N -0.49 -10.84 11.29 -14.97 -0.17 -11.01 15 16 C 0.10 2.04 13.23 52.10 0.69 2.73 15 17 O -0.21 -4.65 10.78 5.37 0.06 -4.59 15 18 H 0.05 0.89 8.14 -51.92 -0.42 0.47 15 19 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 20 H 0.06 1.25 7.57 -51.93 -0.39 0.86 15 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 22 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 24 H 0.17 3.78 8.06 -52.49 -0.42 3.35 15 25 H 0.23 3.13 8.06 -52.49 -0.42 2.70 15 LS Contribution 226.53 15.07 3.41 3.41 Total: -1.00 -29.19 226.53 -3.94 -33.13 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -2.86 Total: 0.23 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.08 Total: -13.13 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.54 Total: -34.85 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: 0.06 Total: -4.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.19 -3.94 -33.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030435.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.707 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds