Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38985 * 119.72734 * 2 1 4 4 C 1.31621 * 120.98338 * 199.06468 * 3 2 1 5 5 C 1.50586 * 120.67433 * 0.07214 * 4 3 2 6 6 H 1.08997 * 109.45914 * 85.95332 * 5 4 3 7 7 C 1.50703 * 109.45810 * 205.92566 * 5 4 3 8 8 H 1.07998 * 119.99597 * 120.00785 * 7 5 4 9 9 C 1.37877 * 120.00153 * 299.99493 * 7 5 4 10 10 N 1.31515 * 119.99716 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 119.99849 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46930 * 90.00805 * 11 9 7 13 13 H 1.48500 * 109.46761 * 210.00451 * 11 9 7 14 14 H 1.48494 * 109.47017 * 330.00461 * 11 9 7 15 15 C 1.53007 * 109.53581 * 325.94786 * 5 4 3 16 16 C 1.34681 * 119.72603 * 179.97438 * 2 1 3 17 17 O 1.21286 * 120.01921 * 359.88130 * 16 2 1 18 18 H 1.09002 * 109.47191 * 270.00133 * 1 2 3 19 19 H 1.09006 * 109.46992 * 29.99871 * 1 2 3 20 20 H 1.08997 * 109.47188 * 149.99834 * 1 2 3 21 21 H 1.07994 * 119.50358 * 19.06720 * 3 2 1 22 22 H 1.08004 * 119.65691 * 180.34793 * 4 3 2 23 23 H 0.97008 * 119.99436 * 179.97438 * 10 9 7 24 24 H 1.08999 * 109.50066 * 167.41517 * 15 5 4 25 25 H 1.09003 * 109.49612 * 287.48092 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1542 1.2069 0.0000 4 6 3.4163 1.2665 -0.3686 5 6 4.1492 0.0248 -0.8030 6 1 3.9752 -0.1466 -1.8653 7 6 5.6256 0.2017 -0.5582 8 1 6.1481 -0.4741 0.1025 9 6 6.3093 1.2261 -1.1780 10 7 5.6729 2.0492 -1.9824 11 14 8.1396 1.4449 -0.8750 12 1 8.9044 0.6610 -1.8778 13 1 8.4929 2.8822 -0.9960 14 1 8.4762 0.9655 0.4895 15 6 3.6400 -1.1761 -0.0031 16 6 2.1328 -1.1696 0.0005 17 8 1.5217 -2.2172 0.0032 18 1 -0.3634 0.0000 1.0277 19 1 -0.3633 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5138 21 1 1.6465 2.1093 0.3070 22 1 3.9328 2.2149 -0.3550 23 1 6.1539 2.7702 -2.4182 24 1 3.9990 -2.0974 -0.4618 25 1 4.0069 -1.1127 1.0213 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260043223.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = -24.304762 kcal Electronic energy + Delta-G solvation = -10767.876678 eV Core-core repulsion = 8746.489351 eV Total energy + Delta-G solvation = -2021.387326 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.77288 -36.03204 -34.18545 -31.67673 -29.05324 -27.09391 -24.88270 -22.28925 -20.98862 -16.88502 -16.55602 -16.05059 -15.42441 -14.91907 -14.51254 -13.30066 -12.98645 -12.61174 -12.39849 -12.09619 -11.68710 -11.19751 -10.95723 -10.70256 -10.31257 -9.98472 -9.72931 -9.48979 -8.88053 -8.53224 -7.03473 -6.13377 -4.20191 2.81425 3.25536 3.32732 3.35886 3.65611 3.77926 4.35146 5.18565 5.32938 5.64741 5.73245 5.85144 6.01964 6.16747 6.26416 6.60266 6.72783 7.15244 7.45387 7.56181 7.67499 7.81002 8.19698 8.26906 8.75709 8.84232 9.45246 10.94277 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.077976 B = 0.011952 C = 0.010803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.996690 B = 2342.216213 C = 2591.241698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.555 5.555 3 C -0.030 4.030 4 C -0.099 4.099 5 C 0.067 3.933 6 H 0.045 0.955 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.063 3.937 10 N -0.887 5.887 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C -0.126 4.126 16 C 0.513 3.487 17 O -0.565 6.565 18 H 0.050 0.950 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.123 0.877 22 H 0.134 0.866 23 H 0.263 0.737 24 H 0.089 0.911 25 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.967 0.520 3.072 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.280 5.280 3 C -0.139 4.139 4 C -0.121 4.121 5 C 0.048 3.952 6 H 0.062 0.938 7 C -0.553 4.553 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.525 5.525 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.165 4.165 16 C 0.304 3.696 17 O -0.444 6.444 18 H 0.069 0.931 19 H 0.087 0.913 20 H 0.092 0.908 21 H 0.141 0.859 22 H 0.151 0.849 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.292 0.111 2.965 6.067 hybrid contribution 0.937 0.462 0.109 1.050 sum -4.355 0.573 3.074 5.361 Atomic orbital electron populations 1.21618 0.80193 1.02836 1.01341 1.45162 1.06418 1.06093 1.70375 1.20729 0.94807 0.87285 1.11099 1.23499 0.92436 1.02749 0.93450 1.17769 0.95067 0.86961 0.95365 0.93759 1.21072 0.92150 1.13871 1.28228 0.92004 1.24997 0.98496 0.95705 0.94757 1.69972 1.36034 1.17101 1.29417 0.86535 0.85122 0.77296 0.78752 1.20576 1.21176 1.19782 1.21859 0.88483 1.02700 1.03493 1.21357 0.91753 0.82306 0.74153 1.90597 1.71125 1.31572 1.51141 0.93145 0.91327 0.90838 0.85919 0.84852 0.92755 0.89274 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.40 59.85 0.62 1.90 15 2 N -0.55 -10.78 3.07 -123.72 -0.38 -11.16 15 3 C -0.03 -0.58 10.15 -16.17 -0.16 -0.74 15 4 C -0.10 -2.23 8.60 -36.23 -0.31 -2.54 15 5 C 0.07 1.62 2.44 -92.97 -0.23 1.39 15 6 H 0.04 1.19 8.14 -51.93 -0.42 0.77 15 7 C -0.52 -13.42 8.51 -34.44 -0.29 -13.71 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.06 1.64 5.19 -17.82 -0.09 1.55 15 10 N -0.89 -24.07 11.81 55.43 0.65 -23.42 15 11 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 15 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 13 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 15 C -0.13 -2.72 5.42 -27.87 -0.15 -2.87 15 16 C 0.51 11.11 7.48 -11.02 -0.08 11.03 15 17 O -0.56 -13.21 16.65 5.55 0.09 -13.12 15 18 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.07 0.88 8.04 -51.93 -0.42 0.46 15 20 H 0.07 1.16 7.40 -51.93 -0.38 0.78 15 21 H 0.12 2.00 8.06 -52.49 -0.42 1.58 15 22 H 0.13 3.20 6.88 -52.48 -0.36 2.84 15 23 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 24 H 0.09 1.87 8.14 -51.93 -0.42 1.45 15 25 H 0.09 1.84 8.08 -51.93 -0.42 1.42 15 LS Contribution 219.53 15.07 3.31 3.31 Total: -1.00 -28.77 219.53 -4.86 -33.63 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -2.81 Total: -0.50 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.70 Total: -4.00 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.27 Total: -34.58 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.77 -4.86 -33.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260043223.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.321 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds