Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30256 * 125.61705 * 2 1 4 4 C 1.34483 * 108.69867 * 180.18672 * 3 2 1 5 5 C 1.50704 * 126.16460 * 179.82556 * 4 3 2 6 6 H 1.08996 * 109.46833 * 334.69798 * 5 4 3 7 7 C 1.52995 * 109.47143 * 214.69459 * 5 4 3 8 8 C 1.50695 * 109.46755 * 94.69425 * 5 4 3 9 9 H 1.08002 * 120.00877 * 5.61911 * 8 5 4 10 10 C 1.37885 * 119.99997 * 185.62608 * 8 5 4 11 11 N 1.31515 * 120.00259 * 197.59599 * 10 8 5 12 12 Si 1.86795 * 119.99731 * 17.58775 * 10 8 5 13 13 H 1.48497 * 109.47278 * 180.02562 * 12 10 8 14 14 H 1.48497 * 109.47754 * 300.00728 * 12 10 8 15 15 H 1.48505 * 109.47151 * 60.00801 * 12 10 8 16 16 C 1.34329 * 107.66815 * 359.56484 * 4 3 2 17 17 O 1.33961 * 125.62261 * 179.71045 * 2 1 3 18 18 H 1.08995 * 109.46869 * 180.31356 * 1 2 3 19 19 H 1.08998 * 109.47424 * 300.31402 * 1 2 3 20 20 H 1.09002 * 109.46866 * 60.31723 * 1 2 3 21 21 H 1.08998 * 109.47476 * 65.98912 * 7 5 4 22 22 H 1.08996 * 109.47088 * 185.99667 * 7 5 4 23 23 H 1.09004 * 109.47050 * 305.99167 * 7 5 4 24 24 H 0.97003 * 119.99919 * 354.78950 * 11 10 8 25 25 H 1.07994 * 126.44305 * 180.23933 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 -0.0042 5 6 4.7571 1.5728 -0.0093 6 1 4.4879 2.5333 -0.4486 7 6 5.8743 0.9301 -0.8337 8 6 5.2335 1.7829 1.4048 9 1 4.7738 1.2382 2.2162 10 6 6.2563 2.6708 1.6630 11 7 6.9053 2.6123 2.8053 12 14 6.7202 3.9568 0.3901 13 1 7.8420 4.7818 0.9059 14 1 7.1386 3.2826 -0.8651 15 1 5.5491 4.8282 0.1172 16 6 3.5698 -0.6756 0.0030 17 8 2.2873 -1.0889 0.0055 18 1 -0.3633 -1.0276 0.0056 19 1 -0.3634 0.5187 0.8871 20 1 -0.3633 0.5089 -0.8928 21 1 5.5693 0.8753 -1.8787 22 1 6.7794 1.5316 -0.7503 23 1 6.0701 -0.0748 -0.4592 24 1 6.6164 1.9957 3.4962 25 1 4.4469 -1.3057 0.0057 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260046135.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = 8.935627 kcal Electronic energy + Delta-G solvation = -10663.745591 eV Core-core repulsion = 8643.799676 eV Total energy + Delta-G solvation = -2019.945915 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 181.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.62640 -35.32004 -33.49337 -31.91896 -30.36081 -26.61743 -24.85756 -22.57553 -20.90698 -19.24180 -17.39877 -16.49304 -16.06719 -14.37281 -13.79366 -13.64352 -13.10068 -12.89186 -12.72434 -12.37119 -11.88373 -11.21789 -10.95836 -10.55246 -10.26733 -10.02322 -9.71043 -9.64271 -8.92698 -8.27421 -7.93997 -6.44915 -4.06534 2.11688 3.34793 3.39640 3.47585 3.48295 3.63757 4.49795 4.56703 5.26768 5.33100 5.52601 5.64822 5.86850 5.94565 6.27924 6.39633 6.51683 6.62431 6.71722 7.04017 7.20348 7.41630 8.05526 8.37932 8.48466 8.89496 9.60871 10.94030 Molecular weight = 181.08amu Principal moments of inertia in cm(-1) A = 0.063948 B = 0.011889 C = 0.011836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.749472 B = 2354.548050 C = 2365.103523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.159 3.841 3 N -0.479 5.479 4 C 0.048 3.952 5 C 0.084 3.916 6 H 0.039 0.961 7 C -0.146 4.146 8 C -0.590 4.590 9 H 0.054 0.946 10 C 0.032 3.968 11 N -0.905 5.905 12 Si 1.047 2.953 13 H -0.285 1.285 14 H -0.273 1.273 15 H -0.281 1.281 16 C -0.106 4.106 17 O -0.216 6.216 18 H 0.080 0.920 19 H 0.090 0.910 20 H 0.090 0.910 21 H 0.026 0.974 22 H 0.062 0.938 23 H 0.044 0.956 24 H 0.267 0.733 25 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 -5.102 -7.123 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.048 4.048 3 N -0.210 5.210 4 C -0.071 4.071 5 C 0.064 3.936 6 H 0.057 0.943 7 C -0.204 4.204 8 C -0.628 4.628 9 H 0.072 0.928 10 C -0.173 4.173 11 N -0.539 5.539 12 Si 0.875 3.125 13 H -0.211 1.211 14 H -0.199 1.199 15 H -0.208 1.208 16 C -0.175 4.175 17 O -0.104 6.104 18 H 0.099 0.901 19 H 0.109 0.891 20 H 0.108 0.892 21 H 0.045 0.955 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.259 -3.331 -7.425 10.905 hybrid contribution -0.759 -2.003 0.540 2.209 sum -8.018 -5.334 -6.885 11.838 Atomic orbital electron populations 1.20078 0.82200 1.03783 1.04442 1.26191 0.96306 0.79508 1.02755 1.70347 1.02622 1.30090 1.17961 1.22245 0.92751 0.92915 0.99216 1.17598 0.85761 0.92323 0.97930 0.94341 1.22252 1.00287 1.00996 0.96868 1.21840 1.22065 1.27917 0.91015 0.92794 1.25791 0.92535 0.98168 1.00791 1.70870 1.36212 1.39583 1.07215 0.84025 0.76649 0.76480 0.75379 1.21103 1.19941 1.20761 1.24619 0.83798 0.96793 1.12265 1.84322 1.17430 1.37654 1.70959 0.90104 0.89121 0.89177 0.95476 0.91926 0.93689 0.92294 0.77473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.51 36.01 0.38 -0.19 15 2 C 0.16 2.95 8.34 -12.95 -0.11 2.84 15 3 N -0.48 -10.86 11.29 -7.35 -0.08 -10.95 15 4 C 0.05 1.14 5.98 -82.81 -0.49 0.64 15 5 C 0.08 2.10 2.34 -92.93 -0.22 1.88 15 6 H 0.04 0.99 6.79 -51.93 -0.35 0.64 15 7 C -0.15 -3.20 8.58 37.16 0.32 -2.89 15 8 C -0.59 -17.16 8.81 -34.44 -0.30 -17.46 15 9 H 0.05 1.72 7.99 -52.49 -0.42 1.30 15 10 C 0.03 0.93 5.30 -17.82 -0.09 0.84 15 11 N -0.90 -28.05 13.70 55.43 0.76 -27.29 15 12 Si 1.05 25.46 26.30 -169.99 -4.47 20.99 15 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 14 H -0.27 -6.04 5.76 56.52 0.33 -5.71 15 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 16 C -0.11 -2.17 11.31 29.35 0.33 -1.84 15 17 O -0.22 -4.14 10.77 5.38 0.06 -4.08 15 18 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 19 H 0.09 1.00 8.14 -51.93 -0.42 0.57 15 20 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.06 1.41 4.88 -51.93 -0.25 1.16 15 23 H 0.04 0.92 6.98 -51.93 -0.36 0.56 15 24 H 0.27 8.28 8.73 -40.82 -0.36 7.92 15 25 H 0.21 3.65 7.23 -52.49 -0.38 3.27 15 LS Contribution 218.36 15.07 3.29 3.29 Total: -1.00 -33.03 218.36 -3.32 -36.35 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -2.69 Total: -2.15 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -0.19 Total: -16.16 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.68 Total: -38.24 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: 0.06 Total: -4.08 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -4.47 Total: 20.99 kcal Total LS contribution 3.29 Total: 3.29 kcal Total: -33.03 -3.32 -36.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260046135.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.282 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds