Wall clock time and date at job start Mon Mar 30 2020 02:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48502 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47292 * 299.99728 * 3 2 1 6 6 H 1.48508 * 109.47066 * 59.99820 * 3 2 1 7 7 C 1.40153 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99774 * 180.02562 * 7 2 1 9 9 C 1.40858 * 119.99992 * 0.02562 * 7 2 1 10 10 N 1.34220 * 120.70706 * 359.97438 * 9 7 2 11 11 C 1.31727 * 120.62347 * 180.02562 * 10 9 7 12 12 O 1.35515 * 118.90179 * 179.97438 * 11 10 9 13 13 N 1.32705 * 122.19102 * 0.26672 * 11 10 9 14 14 C 1.32128 * 121.37478 * 359.46628 * 13 11 10 15 15 C 1.39548 * 119.18226 * 0.51170 * 14 13 11 16 16 N 1.38617 * 120.97887 * 179.76770 * 15 14 13 17 17 H 0.97005 * 120.00393 * 0.02562 * 1 2 3 18 18 H 0.96701 * 113.99666 * 90.00974 * 12 11 10 19 19 H 1.07996 * 120.41165 * 180.24001 * 14 13 11 20 20 H 0.97001 * 119.99622 * 179.97438 * 16 15 14 21 21 H 0.96997 * 119.99934 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8821 2.3965 1.2125 7 6 2.0076 -1.2138 0.0005 8 1 3.0876 -1.2137 0.0010 9 6 1.3033 -2.4336 0.0005 10 7 -0.0388 -2.4502 0.0005 11 6 -0.6958 -3.5919 0.0010 12 8 -2.0507 -3.5679 0.0016 13 7 -0.0750 -4.7648 0.0068 14 6 1.2438 -4.8451 0.0018 15 6 1.9971 -3.6704 0.0012 16 7 3.3826 -3.7112 0.0009 17 1 -0.4851 0.8401 -0.0004 18 1 -2.4443 -3.5613 -0.8817 19 1 1.7329 -5.8080 0.0028 20 1 3.8921 -2.8857 0.0001 21 1 3.8426 -4.5651 0.0015 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125854.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:54 Heat of formation + Delta-G solvation = 5.702595 kcal Electronic energy + Delta-G solvation = -10522.567491 eV Core-core repulsion = 8398.941038 eV Total energy + Delta-G solvation = -2123.626453 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.04429 -36.17665 -33.91958 -33.40730 -31.32799 -27.79322 -26.05498 -22.36373 -21.37777 -18.26977 -17.34374 -16.37609 -15.48421 -14.86655 -14.54344 -14.15839 -13.17645 -12.60415 -12.28678 -11.35913 -11.18184 -10.99338 -10.53352 -10.26899 -9.95756 -9.79251 -9.53651 -8.63139 -7.34667 -6.70646 -6.42954 -4.57591 2.69131 2.84397 3.03292 3.06792 3.16909 3.85757 4.60386 4.86480 5.09390 5.75124 5.96848 6.33458 6.63137 6.82833 7.05365 7.52532 7.88937 8.10025 8.55613 8.60603 8.78851 8.84064 9.20796 10.11643 10.23628 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.046718 B = 0.017131 C = 0.012604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.195379 B = 1634.086975 C = 2220.912199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.068 3.932 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.423 4.423 8 H 0.087 0.913 9 C 0.257 3.743 10 N -0.506 5.506 11 C 0.432 3.568 12 O -0.477 6.477 13 N -0.598 5.598 14 C 0.052 3.948 15 C 0.018 3.982 16 N -0.870 5.870 17 H 0.275 0.725 18 H 0.383 0.617 19 H 0.128 0.872 20 H 0.392 0.608 21 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.428 -0.045 -1.662 4.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.105 0.895 9 C 0.121 3.879 10 N -0.238 5.238 11 C 0.124 3.876 12 O -0.277 6.277 13 N -0.331 5.331 14 C -0.108 4.108 15 C -0.092 4.092 16 N -0.414 5.414 17 H 0.087 0.913 18 H 0.237 0.763 19 H 0.145 0.855 20 H 0.221 0.779 21 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.104 0.051 -1.033 3.272 hybrid contribution 1.483 0.639 -0.483 1.685 sum 4.586 0.690 -1.517 4.880 Atomic orbital electron populations 1.70110 1.07207 1.28050 1.27201 1.26065 0.94942 1.01112 0.93814 0.86228 0.80624 0.81029 0.78689 1.18395 1.19745 1.19735 1.19289 0.94024 0.89123 1.43472 0.89541 1.18354 0.87053 0.90675 0.91813 1.68857 1.07589 1.26072 1.21243 1.20222 0.84644 0.84976 0.97764 1.84644 1.14765 1.95868 1.32378 1.67299 1.10297 1.29925 1.25574 1.21535 0.88483 0.95137 1.05599 1.19579 0.85405 0.96431 1.07736 1.41577 1.03035 1.09064 1.87721 0.91312 0.76335 0.85473 0.77868 0.79303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.63 11.51 55.56 0.64 -17.99 14 2 C 0.07 1.67 5.50 -17.32 -0.10 1.58 14 3 Si 0.91 17.84 29.56 -169.99 -5.02 12.81 14 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 5 H -0.27 -5.28 7.11 56.52 0.40 -4.87 14 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 7 C -0.42 -10.78 8.93 -37.87 -0.34 -11.12 14 8 H 0.09 1.97 6.23 -52.49 -0.33 1.64 14 9 C 0.26 6.95 6.59 -84.47 -0.56 6.39 14 10 N -0.51 -14.52 8.05 -12.57 -0.10 -14.62 14 11 C 0.43 11.72 8.69 -91.42 -0.79 10.93 14 12 O -0.48 -11.53 13.64 -18.24 -0.25 -11.78 14 13 N -0.60 -15.54 10.43 -14.56 -0.15 -15.69 14 14 C 0.05 1.23 11.20 -16.94 -0.19 1.04 14 15 C 0.02 0.43 6.85 -82.94 -0.57 -0.14 14 16 N -0.87 -16.16 8.99 32.91 0.30 -15.87 14 17 H 0.28 6.57 8.29 -40.82 -0.34 6.24 14 18 H 0.38 7.16 9.06 45.56 0.41 7.58 14 19 H 0.13 2.53 8.06 -52.49 -0.42 2.11 14 20 H 0.39 6.94 6.97 -40.82 -0.28 6.65 14 21 H 0.38 5.77 8.86 -40.82 -0.36 5.41 14 LS Contribution 198.73 15.07 2.99 2.99 Total: -1.00 -31.87 198.73 -4.26 -36.13 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -0.12 Total: 15.33 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -2.54 Total: 8.68 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: 0.68 Total: -64.17 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.25 Total: -11.78 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.02 Total: 12.81 kcal Total LS contribution 2.99 Total: 2.99 kcal Total: -31.87 -4.26 -36.13 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125854.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.832 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds