Wall clock time and date at job start Mon Mar 30 2020 02:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48502 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47292 * 299.99728 * 3 2 1 6 6 H 1.48508 * 109.47066 * 59.99820 * 3 2 1 7 7 C 1.40153 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99774 * 180.02562 * 7 2 1 9 9 C 1.40858 * 119.99992 * 0.02562 * 7 2 1 10 10 N 1.34220 * 120.70706 * 359.97438 * 9 7 2 11 11 C 1.31727 * 120.62347 * 180.02562 * 10 9 7 12 12 O 1.35515 * 118.90179 * 179.97438 * 11 10 9 13 13 N 1.32705 * 122.19102 * 0.26672 * 11 10 9 14 14 C 1.32128 * 121.37478 * 359.46628 * 13 11 10 15 15 C 1.39548 * 119.18226 * 0.51170 * 14 13 11 16 16 N 1.38617 * 120.97887 * 179.76770 * 15 14 13 17 17 H 0.97005 * 120.00393 * 0.02562 * 1 2 3 18 18 H 0.96701 * 113.99666 * 90.00974 * 12 11 10 19 19 H 1.07996 * 120.41165 * 180.24001 * 14 13 11 20 20 H 0.97001 * 119.99622 * 179.97438 * 16 15 14 21 21 H 0.96997 * 119.99934 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3464 0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8821 2.3965 1.2125 7 6 2.0076 -1.2138 0.0005 8 1 3.0876 -1.2137 0.0010 9 6 1.3033 -2.4336 0.0005 10 7 -0.0388 -2.4502 0.0005 11 6 -0.6958 -3.5919 0.0010 12 8 -2.0507 -3.5679 0.0016 13 7 -0.0750 -4.7648 0.0068 14 6 1.2438 -4.8451 0.0018 15 6 1.9971 -3.6704 0.0012 16 7 3.3826 -3.7112 0.0009 17 1 -0.4851 0.8401 -0.0004 18 1 -2.4443 -3.5613 -0.8817 19 1 1.7329 -5.8080 0.0028 20 1 3.8921 -2.8857 0.0001 21 1 3.8426 -4.5651 0.0015 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125854.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:53 Heat of formation + Delta-G solvation = -23.056588 kcal Electronic energy + Delta-G solvation = -10523.814583 eV Core-core repulsion = 8398.941038 eV Total energy + Delta-G solvation = -2124.873545 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 181.059 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.94775 -38.03637 -35.79114 -35.15849 -33.26656 -29.66502 -27.91726 -24.26077 -23.27920 -20.14894 -19.22499 -18.19378 -17.23257 -16.68340 -16.32491 -15.87646 -15.00927 -14.34701 -14.14303 -12.96849 -12.86426 -12.86012 -12.39924 -11.87339 -11.74624 -11.59606 -11.45195 -10.57634 -9.28147 -8.50408 -8.29304 -6.46985 0.81404 0.99295 1.44550 1.56779 1.60636 2.22122 2.77997 3.03501 3.46971 3.81127 4.19605 4.46960 4.84144 4.98789 5.21189 5.74843 6.01484 6.30358 6.70557 6.87994 6.94612 7.31719 7.37750 8.19413 8.41153 Molecular weight = 181.06amu Principal moments of inertia in cm(-1) A = 0.046718 B = 0.017131 C = 0.012604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.195379 B = 1634.086975 C = 2220.912199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.019 3.981 3 Si 0.995 3.005 4 H -0.243 1.243 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.442 4.442 8 H 0.109 0.891 9 C 0.215 3.785 10 N -0.541 5.541 11 C 0.406 3.594 12 O -0.484 6.484 13 N -0.606 5.606 14 C 0.035 3.965 15 C 0.027 3.973 16 N -0.849 5.849 17 H 0.281 0.719 18 H 0.402 0.598 19 H 0.166 0.834 20 H 0.399 0.601 21 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.359 0.355 -1.759 6.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.204 4.204 3 Si 0.814 3.186 4 H -0.165 1.165 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.477 4.477 8 H 0.127 0.873 9 C 0.080 3.920 10 N -0.274 5.274 11 C 0.098 3.902 12 O -0.287 6.287 13 N -0.340 5.340 14 C -0.124 4.124 15 C -0.085 4.085 16 N -0.394 5.394 17 H 0.092 0.908 18 H 0.259 0.741 19 H 0.183 0.817 20 H 0.229 0.771 21 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 5.075 0.404 -1.144 5.218 hybrid contribution 0.911 0.455 -0.463 1.118 sum 5.986 0.859 -1.606 6.257 Atomic orbital electron populations 1.70237 1.09330 1.29480 1.28167 1.27138 0.95684 1.05018 0.92581 0.84969 0.79750 0.75377 0.78473 1.16542 1.19403 1.19700 1.19813 0.95242 0.89360 1.43324 0.87274 1.18942 0.87265 0.92684 0.93118 1.68811 1.08866 1.27020 1.22653 1.20464 0.85412 0.85286 0.99056 1.84573 1.13969 1.95860 1.34272 1.67350 1.11603 1.29376 1.25627 1.22129 0.87943 0.96737 1.05601 1.19604 0.87366 0.95449 1.06042 1.41456 1.01112 1.10694 1.86122 0.90828 0.74147 0.81717 0.77064 0.76918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.15 11.51 21.86 0.25 -39.90 14 2 C 0.02 0.92 5.50 85.33 0.47 1.39 14 3 Si 0.99 35.61 29.56 68.60 2.03 37.63 14 4 H -0.24 -7.91 7.11 99.48 0.71 -7.20 14 5 H -0.27 -9.42 7.11 99.48 0.71 -8.71 14 6 H -0.27 -9.65 7.11 99.48 0.71 -8.94 14 7 C -0.44 -22.12 8.93 23.38 0.21 -21.91 14 8 H 0.11 4.73 6.23 -2.91 -0.02 4.71 14 9 C 0.22 11.63 6.59 40.30 0.27 11.90 14 10 N -0.54 -31.56 8.05 -306.90 -2.47 -34.03 14 11 C 0.41 22.34 8.69 180.63 1.57 23.90 14 12 O -0.48 -23.84 13.64 -88.17 -1.20 -25.05 14 13 N -0.61 -31.32 10.43 -312.70 -3.26 -34.58 14 14 C 0.04 1.60 11.20 84.96 0.95 2.55 14 15 C 0.03 1.23 6.85 39.27 0.27 1.50 14 16 N -0.85 -29.11 8.99 -49.81 -0.45 -29.56 14 17 H 0.28 13.60 8.29 -92.70 -0.77 12.83 14 18 H 0.40 15.35 9.06 -74.06 -0.67 14.68 14 19 H 0.17 6.07 8.06 -2.91 -0.02 6.04 14 20 H 0.40 12.90 6.97 -92.71 -0.65 12.26 14 21 H 0.40 10.71 8.86 -92.71 -0.82 9.89 14 Total: -1.00 -68.40 198.73 -2.20 -70.60 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.83 Total: 35.56 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 3.73 Total: 19.33 kcal Atomic # 7 Polarization: -132.15 SS G_CDS: -5.93 Total: -138.08 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.20 Total: -25.05 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.63 kcal Total: -68.40 -2.20 -70.60 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125854.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.541 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds